Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0609 ATGGAAGGAGGAGTTTGTTCATCGACGGTGACTTCTTCAACAACAAGCAGCACGGAGAAAAGAAAGCAAAGGCATCTAAATCAAGTTCAAGACAAGCCATACAGAGGTATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAAATCAGGGAACCCAACAAACGGTCTAGGATTTGGCTTGGTTCTTACACGACACCGGTTGCCGCCGCTCGTGCTTATGATACTGCCGTGTTTTACCTTCGTGGCCCTACCGCGCGCCTTAATTTTCCCGAATTGATGTTTGAAGAAAACCAACTTCATGATATGTCCGCCGCTTCTATACGAAAACGAGCTACGGAAGTCGGTGCTAGGGTTGATGCTATCCAGTCTTCTCTCCATGGTTCCAATTCTAATTCTTCGAGCCAGGTTTCTGAAAAGCCTGATTTAAACGAGTTTCCAAACCCTGAAAACTCAGATGATGATTAA 465 46.24 MEGGVCSSTVTSSTTSSTEKRKQRHLNQVQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEENQLHDMSAASIRKRATEVGARVDAIQSSLHGSNSNSSSQVSEKPDLNEFPNPENSDDD 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3583078 3583542 + evm.model.ptg000002l.1050 HCH12g0609 555456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0609 154 MobiDBLite consensus disorder prediction 1 28 - -
HCH12g0609 154 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 MobiDBLite consensus disorder prediction 122 141 - -
HCH12g0609 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 153 - -
HCH12g0609 154 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
HCH12g0609 154 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 MobiDBLite consensus disorder prediction 1 17 - -
HCH12g0609 154 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0609 154 FunFam Ethylene-responsive transcription factor 2 32 91 - -
HCH12g0609 154 MobiDBLite consensus disorder prediction 121 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0609 HCH-Chr12:3583078 HCH14g1076 HCH-Chr14:37773807 1.30E-26 dispersed
HCH12g0609 HCH-Chr12:3583078 HCH14g0299 HCH-Chr14:31600343 4.70E-40 wgd
HCH12g0609 HCH-Chr12:3583078 HCH4g0625 HCH-Chr4:4087899 1.70E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32687 PF00847 AP2 2.30E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0609 K09286 - csv:101219005 229.95