Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0616 | ATGAGTGAAATTTTTCTATCTTTTCTCTTCATCTTTCTTCTCTCTCTGTTATCATATATTTCTTTAAAGAGAAACAAGAAATCAGTAGCCATGAAAATGAACGAAGCTAAGCTCCCTCCTGGTTCATTGGGTTGGCCTTATTTTGGACAAACCTTACAACTTTATTCTCAAGACCCTGATATTTTCTTTGCCGCCAAACAGAAAAGGTATGGAGAAATATTCAAGACACACATACTAGGTTGTCCTTGTGTGATGTTAGCCAGCCCTGAGGCAGCGAAGTTCGTGTTAACGACACAAGCTCACTTATTCAAACCAACTTATCCCAAAAGCAAAGAGCGTTTAATTGGGCCATCAGCCCTGTTTTTTCACCAAGGCGATTACCATTTACGGATCAGGAAGTTATTTCAGAGCTCTCTTTCTTTAGTCACCATAAAAAACTGGGTGCCTGACATTGACTCAGCCGCAGCCGCGGCCCTTGACTCCTGGGCTGGCGGTCGTATCATTAACACCTTTCAGGAAATGAAAAAGATATCTTTTGAAGTTGGCATATTAGTTATTTTTGGACATCTGGAAGCTGGTTACAAAGAGGATCTCAAAAAGAATTATTGCATTTTAGACAAAGGCTATAACTCTTTTCCTAGCAACATTCCTGGAACTTTATACAAAAAAGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATTCTGAGTGATATAATTAGTGAGAGGAGGGAGAAGAAGGAAAGTGCGAGGGATCTTTTGGGGAGTTTTATGGAGTCAAGGAATGAAGAAGGAGAAGTTTTAAGCGATGCCCAGATTGCAGATAACATAATTGGAGGGCTGTTTGCTGCTCAAGATACTACAGCAAGTGTCATGACTTGGATTGTTAAATACCTTCATGATGAACCAAAGCTTCTGCAGGCTTTAGTTACAGAGCAGATGGGAATTCAACAATCAAATAGTGAAAATAACCAACAGTTGAACTGGAATCATACAAGAAATATGCCCATCAGTTACAAGGTAGTATTAGAGAGCTTGAGAATGGCAAGCATTATATCATTCCTTTTCAGAGAGGCTGTAGCTGATGTGGAATATAAAGGATATTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCAGAAATATCCACCACAGCCCAGAATATTTCACAGATCCTCACAAATTTGACCCTTCCAGATTTGAGGTGGCACCAAAACCCAATACGTTCGTGCCATTTGGCAGTGGAATTCATGCCTGCCCAGGAAATGAACTTGCCAAGCTGGAAATCTTGATTACGATCCATCATTTAGTTACCAAATTCAGATGGGAATTGGTTGGTTCGCAAATCGGGGTTCAACATAGCCCATTCCCGGTTCCATTTGAAGGCCTTCCAGCCAGATTTTGGAAAACAAATCACCAACTAAAATGCAGTGGATCGTCATAA | 1443 | 40.4 | MSEIFLSFLFIFLLSLLSYISLKRNKKSVAMKMNEAKLPPGSLGWPYFGQTLQLYSQDPDIFFAAKQKRYGEIFKTHILGCPCVMLASPEAAKFVLTTQAHLFKPTYPKSKERLIGPSALFFHQGDYHLRIRKLFQSSLSLVTIKNWVPDIDSAAAAALDSWAGGRIINTFQEMKKISFEVGILVIFGHLEAGYKEDLKKNYCILDKGYNSFPSNIPGTLYKKALSARKRLSKILSDIISERREKKESARDLLGSFMESRNEEGEVLSDAQIADNIIGGLFAAQDTTASVMTWIVKYLHDEPKLLQALVTEQMGIQQSNSENNQQLNWNHTRNMPISYKVVLESLRMASIISFLFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFTDPHKFDPSRFEVAPKPNTFVPFGSGIHACPGNELAKLEILITIHHLVTKFRWELVGSQIGVQHSPFPVPFEGLPARFWKTNHQLKCSGSS | 480 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3676969 | 3679558 | - | evm.model.ptg000002l.1043 | HCH12g0616 | 555463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0616 | 480 | SUPERFAMILY | Cytochrome P450 | 36 | 468 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PANTHER | CYTOCHROME P450 26 | 37 | 451 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH12g0616 | 480 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 412 | 421 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH12g0616 | 480 | PRINTS | P450 superfamily signature | 410 | 419 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | P450 superfamily signature | 419 | 430 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | P450 superfamily signature | 339 | 350 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | P450 superfamily signature | 282 | 299 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | E-class P450 group I signature | 378 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | E-class P450 group I signature | 409 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | PRINTS | E-class P450 group I signature | 419 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | CDD | CYP90-like | 67 | 466 | - | - | |
| HCH12g0616 | 480 | Gene3D | Cytochrome P450 | 27 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0616 | 480 | FunFam | Abscisic acid 8 | 28 | 469 | - | - | |
| HCH12g0616 | 480 | Pfam | Cytochrome P450 | 39 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0616 | HCH-Chr12:3676969 | HCH7g0640 | HCH-Chr7:6303776 | 4.60E-187 | dispersed | |
| HCH12g0616 | HCH-Chr12:3676969 | HCH4g0644 | HCH-Chr4:4222083 | 3.60E-187 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0616 | K09843 | - | csv:101213916 | 740.339 |