Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0616 ATGAGTGAAATTTTTCTATCTTTTCTCTTCATCTTTCTTCTCTCTCTGTTATCATATATTTCTTTAAAGAGAAACAAGAAATCAGTAGCCATGAAAATGAACGAAGCTAAGCTCCCTCCTGGTTCATTGGGTTGGCCTTATTTTGGACAAACCTTACAACTTTATTCTCAAGACCCTGATATTTTCTTTGCCGCCAAACAGAAAAGGTATGGAGAAATATTCAAGACACACATACTAGGTTGTCCTTGTGTGATGTTAGCCAGCCCTGAGGCAGCGAAGTTCGTGTTAACGACACAAGCTCACTTATTCAAACCAACTTATCCCAAAAGCAAAGAGCGTTTAATTGGGCCATCAGCCCTGTTTTTTCACCAAGGCGATTACCATTTACGGATCAGGAAGTTATTTCAGAGCTCTCTTTCTTTAGTCACCATAAAAAACTGGGTGCCTGACATTGACTCAGCCGCAGCCGCGGCCCTTGACTCCTGGGCTGGCGGTCGTATCATTAACACCTTTCAGGAAATGAAAAAGATATCTTTTGAAGTTGGCATATTAGTTATTTTTGGACATCTGGAAGCTGGTTACAAAGAGGATCTCAAAAAGAATTATTGCATTTTAGACAAAGGCTATAACTCTTTTCCTAGCAACATTCCTGGAACTTTATACAAAAAAGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATTCTGAGTGATATAATTAGTGAGAGGAGGGAGAAGAAGGAAAGTGCGAGGGATCTTTTGGGGAGTTTTATGGAGTCAAGGAATGAAGAAGGAGAAGTTTTAAGCGATGCCCAGATTGCAGATAACATAATTGGAGGGCTGTTTGCTGCTCAAGATACTACAGCAAGTGTCATGACTTGGATTGTTAAATACCTTCATGATGAACCAAAGCTTCTGCAGGCTTTAGTTACAGAGCAGATGGGAATTCAACAATCAAATAGTGAAAATAACCAACAGTTGAACTGGAATCATACAAGAAATATGCCCATCAGTTACAAGGTAGTATTAGAGAGCTTGAGAATGGCAAGCATTATATCATTCCTTTTCAGAGAGGCTGTAGCTGATGTGGAATATAAAGGATATTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCAGAAATATCCACCACAGCCCAGAATATTTCACAGATCCTCACAAATTTGACCCTTCCAGATTTGAGGTGGCACCAAAACCCAATACGTTCGTGCCATTTGGCAGTGGAATTCATGCCTGCCCAGGAAATGAACTTGCCAAGCTGGAAATCTTGATTACGATCCATCATTTAGTTACCAAATTCAGATGGGAATTGGTTGGTTCGCAAATCGGGGTTCAACATAGCCCATTCCCGGTTCCATTTGAAGGCCTTCCAGCCAGATTTTGGAAAACAAATCACCAACTAAAATGCAGTGGATCGTCATAA 1443 40.4 MSEIFLSFLFIFLLSLLSYISLKRNKKSVAMKMNEAKLPPGSLGWPYFGQTLQLYSQDPDIFFAAKQKRYGEIFKTHILGCPCVMLASPEAAKFVLTTQAHLFKPTYPKSKERLIGPSALFFHQGDYHLRIRKLFQSSLSLVTIKNWVPDIDSAAAAALDSWAGGRIINTFQEMKKISFEVGILVIFGHLEAGYKEDLKKNYCILDKGYNSFPSNIPGTLYKKALSARKRLSKILSDIISERREKKESARDLLGSFMESRNEEGEVLSDAQIADNIIGGLFAAQDTTASVMTWIVKYLHDEPKLLQALVTEQMGIQQSNSENNQQLNWNHTRNMPISYKVVLESLRMASIISFLFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFTDPHKFDPSRFEVAPKPNTFVPFGSGIHACPGNELAKLEILITIHHLVTKFRWELVGSQIGVQHSPFPVPFEGLPARFWKTNHQLKCSGSS 480
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3676969 3679558 - evm.model.ptg000002l.1043 HCH12g0616 555463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0616 480 SUPERFAMILY Cytochrome P450 36 468 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PANTHER CYTOCHROME P450 26 37 451 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
HCH12g0616 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH12g0616 480 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS P450 superfamily signature 282 299 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS E-class P450 group I signature 378 402 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 CDD CYP90-like 67 466 - -
HCH12g0616 480 Gene3D Cytochrome P450 27 469 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0616 480 FunFam Abscisic acid 8 28 469 - -
HCH12g0616 480 Pfam Cytochrome P450 39 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0616 HCH-Chr12:3676969 HCH7g0640 HCH-Chr7:6303776 4.60E-187 dispersed
HCH12g0616 HCH-Chr12:3676969 HCH4g0644 HCH-Chr4:4222083 3.60E-187 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0616 K09843 - csv:101213916 740.339