Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0625 | ATGGAAAATGATCATACTATGAAATCTGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCAGAATTCTGCAACTCCTACAATGATCTTTCACCCACATCTGATTTCAGCACAAGCACTGAGCCACATTGTCTCGAAACCCTACAAGCGGTGGAATCATCATCTCCATTCATAAACTTCAATTTTCCCACCGGCCCAATACAAGAACCGCGGTGCATGGAGGCGAGAGACCCATTTCCGACCACCCAACGGTGGAAAAGTTCAATGCTTTATGGCGATCATCATCATCAAAATGGGTCGTCTAAATTACCCAATTCACAGCAGAAACAGAATTCAGTGGCGGCGATGAGAGAGATGATATTTAGAATAGCAGTGATGCAGCCAATTCATATAGACCCAGAAGCGGTAAAGCCACCAAAAAGAAGGAACGTGAAGATATCGACGGATCCACAAAGCGTAGCGGCAAGGCATAGGAGAGAGAGAATAAGCGAGAGGATTAGAATACTCCAAAGATTGGTTCCTGGAGGGACGAAAATGGATACAGCTTCAATGCTTGATGAGGCAATTCATTACGTTAAATTTTTAAAGAATCAAGTGCAATCTCTTGAAAGAGTTTCTTCAGCTACTAATAGGCCACTTACTTCTTCTTCTTCTGGGAATGGATTAGGGTTTCCATTCGAAATGTCTAAATTACCATCCCGATTGCAACAAAATGTTGAGCAAATCGGAGATGTTTAG | 753 | 41.97 | MENDHTMKSEDQMEIMMMMQQMEKIPEFCNSYNDLSPTSDFSTSTEPHCLETLQAVESSSPFINFNFPTGPIQEPRCMEARDPFPTTQRWKSSMLYGDHHHQNGSSKLPNSQQKQNSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERVSSATNRPLTSSSSGNGLGFPFEMSKLPSRLQQNVEQIGDV | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3745148 | 3745900 | - | evm.model.ptg000002l.1034 | HCH12g0625 | 555472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0625 | 250 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 11 | 233 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0625 | 250 | FunFam | BHLH transcription factor | 154 | 217 | - | - | |
HCH12g0625 | 250 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 201 | IPR011598 | GO:0046983(InterPro) | |
HCH12g0625 | 250 | SMART | finulus | 157 | 206 | IPR011598 | GO:0046983(InterPro) | |
HCH12g0625 | 250 | MobiDBLite | consensus disorder prediction | 211 | 228 | - | - | |
HCH12g0625 | 250 | MobiDBLite | consensus disorder prediction | 211 | 230 | - | - | |
HCH12g0625 | 250 | Coils | Coil | 190 | 210 | - | - | |
HCH12g0625 | 250 | Gene3D | - | 154 | 221 | IPR036638 | GO:0046983(InterPro) | |
HCH12g0625 | 250 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 200 | IPR011598 | GO:0046983(InterPro) | |
HCH12g0625 | 250 | MobiDBLite | consensus disorder prediction | 96 | 117 | - | - | |
HCH12g0625 | 250 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 215 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0625 | HCH-Chr12:3745148 | HCH4g0634 | HCH-Chr4:4156375 | 8.40E-47 | dispersed | |
HCH14g0137 | HCH-Chr14:23587551 | HCH12g0625 | HCH-Chr12:3745148 | 1.20E-33 | transposed | |
HCH2g0057 | HCH-Chr2:4027867 | HCH12g0625 | HCH-Chr12:3745148 | 3.80E-44 | transposed | |
HCH9g0788 | HCH-Chr9:5466071 | HCH12g0625 | HCH-Chr12:3745148 | 1.20E-19 | transposed | |
HCH12g0625 | HCH-Chr12:3745148 | HCH4g0628 | HCH-Chr4:4118902 | 4.50E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32690 | PF00010 | HLH | 1.70E-06 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0625 | - | - | - | 0.0 |