Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0625 ATGGAAAATGATCATACTATGAAATCTGAGGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCAGAATTCTGCAACTCCTACAATGATCTTTCACCCACATCTGATTTCAGCACAAGCACTGAGCCACATTGTCTCGAAACCCTACAAGCGGTGGAATCATCATCTCCATTCATAAACTTCAATTTTCCCACCGGCCCAATACAAGAACCGCGGTGCATGGAGGCGAGAGACCCATTTCCGACCACCCAACGGTGGAAAAGTTCAATGCTTTATGGCGATCATCATCATCAAAATGGGTCGTCTAAATTACCCAATTCACAGCAGAAACAGAATTCAGTGGCGGCGATGAGAGAGATGATATTTAGAATAGCAGTGATGCAGCCAATTCATATAGACCCAGAAGCGGTAAAGCCACCAAAAAGAAGGAACGTGAAGATATCGACGGATCCACAAAGCGTAGCGGCAAGGCATAGGAGAGAGAGAATAAGCGAGAGGATTAGAATACTCCAAAGATTGGTTCCTGGAGGGACGAAAATGGATACAGCTTCAATGCTTGATGAGGCAATTCATTACGTTAAATTTTTAAAGAATCAAGTGCAATCTCTTGAAAGAGTTTCTTCAGCTACTAATAGGCCACTTACTTCTTCTTCTTCTGGGAATGGATTAGGGTTTCCATTCGAAATGTCTAAATTACCATCCCGATTGCAACAAAATGTTGAGCAAATCGGAGATGTTTAG 753 41.97 MENDHTMKSEDQMEIMMMMQQMEKIPEFCNSYNDLSPTSDFSTSTEPHCLETLQAVESSSPFINFNFPTGPIQEPRCMEARDPFPTTQRWKSSMLYGDHHHQNGSSKLPNSQQKQNSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERVSSATNRPLTSSSSGNGLGFPFEMSKLPSRLQQNVEQIGDV 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3745148 3745900 - evm.model.ptg000002l.1034 HCH12g0625 555472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0625 250 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 233 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0625 250 FunFam BHLH transcription factor 154 217 - -
HCH12g0625 250 Pfam Helix-loop-helix DNA-binding domain 160 201 IPR011598 GO:0046983(InterPro)
HCH12g0625 250 SMART finulus 157 206 IPR011598 GO:0046983(InterPro)
HCH12g0625 250 MobiDBLite consensus disorder prediction 211 228 - -
HCH12g0625 250 MobiDBLite consensus disorder prediction 211 230 - -
HCH12g0625 250 Coils Coil 190 210 - -
HCH12g0625 250 Gene3D - 154 221 IPR036638 GO:0046983(InterPro)
HCH12g0625 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983(InterPro)
HCH12g0625 250 MobiDBLite consensus disorder prediction 96 117 - -
HCH12g0625 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 215 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0625 HCH-Chr12:3745148 HCH4g0634 HCH-Chr4:4156375 8.40E-47 dispersed
HCH14g0137 HCH-Chr14:23587551 HCH12g0625 HCH-Chr12:3745148 1.20E-33 transposed
HCH2g0057 HCH-Chr2:4027867 HCH12g0625 HCH-Chr12:3745148 3.80E-44 transposed
HCH9g0788 HCH-Chr9:5466071 HCH12g0625 HCH-Chr12:3745148 1.20E-19 transposed
HCH12g0625 HCH-Chr12:3745148 HCH4g0628 HCH-Chr4:4118902 4.50E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32690 PF00010 HLH 1.70E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0625 - - - 0.0