Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0636 ATGTCCACAAGGAGTGAACATCATCAAACAGTCCCGCTTTCTGTGCTGCTGAAACGTGAATTGGCAATTGAGAAGATTGAGAGACCCGAAATAATACACGGTCAGGCGAGTCAGAGTAAGAAGGGTGAGGATTTTACATTGTTGAAGACGGAATGCGAGAGAGTGGTTGGAGACGGAGTTTCTACGTATTCGGTTTTTGGGCTATTTGATGGGCACAATGGATCGGCTGCTGCTATTTACTCTAAGGAGAATCTCTTAAACAGTGTTCTAGCTGCTATTCCTTCAGATCTTAACAGAGATGAATGGATTGCTGCGTTGCCTAGGGCTTTGGTTGCGGGTTTTGTGAAGACAGACAAGGATTTTCAAGAGAAAGCACAAACATCAGGAACTACTGTTACCTTTGTAATTATCGAGGGATGGGTTGTCACTGTTGCTTCTGTTGGTGACTCCCGTTGCACTTTAGAATCAGCTGATGGTGGCATCTATTACTTATCAGCAGATCATAGACTAGAATGCAGTGAAGAAGAGAGGGAGCGTATAATTGCTAGTGGTGGTGAGGTGGGTCGGCTCAATACTGGTGGCGGTGCAGAGATTGGCCCTTTGAGATGCTGGCCTGGTGGCTTGTGTCTATCACGATCAATCGGGGATATGGATGTTGGCGAGTATATCGTACCTGTTCCTCATGTGAAGCAAGTTAAGCTATCTACTGCTGGTGGTAGGCTTATTGTTTCAAGTGATGGTGTCTGGGATGCTGTATCAGCTGAAACAGCGTATGACTGTTGTCGTGGAATGCCGGCAGAAACTGCTGCTGCACAAATTGTTAAAGAAGCCGTACAGGCAAAGGGACTTCGAGATGATACTACTTGCATTGTGATTGACATATTACCGAGGGATAAACCATCTGCTCCTTTGCCACCACCAAAAAAACCGGGCAAAGGAGTGTTTAAATCCATGTTTCGCAAAAAGTCTTCTGAATCATCTTCTCATTATGAAAATGAATACAATGAGCCGGATATTGTTGAGGAATTATTTGAGGAAGGATCAGCTATGCTCTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTCTTTACTTGTGCAGTATGCCAAGTAGAAATGCAACCCAAGGAGGGTGTTTCCATTTATGCTGGCTCATCTAACAGAGGAAAATTGCGTGCTTGGGATGGACCTTTCCTATGCTTAAGCTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGGACATCTGGAGATAGACACAGCAGTGGAAGTGACTAG 1290 44.65 MSTRSEHHQTVPLSVLLKRELAIEKIERPEIIHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNSVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFVIIEGWVVTVASVGDSRCTLESADGGIYYLSADHRLECSEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSTAGGRLIVSSDGVWDAVSAETAYDCCRGMPAETAAAQIVKEAVQAKGLRDDTTCIVIDILPRDKPSAPLPPPKKPGKGVFKSMFRKKSSESSSHYENEYNEPDIVEELFEEGSAMLSERLDAKYPICNMFKLFTCAVCQVEMQPKEGVSIYAGSSNRGKLRAWDGPFLCLSCQEKKEAMEGKRTSGDRHSSGSD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3825432 3828250 - evm.model.ptg000002l.1023 HCH12g0636 555483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0636 429 SUPERFAMILY PP2C-like 39 294 IPR036457 -
HCH12g0636 429 CDD PP2Cc 40 294 IPR001932 -
HCH12g0636 429 PANTHER PROTEIN PHOSPHATASE 33 293 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH12g0636 429 Pfam Protein phosphatase 2C 55 279 IPR001932 -
HCH12g0636 429 Gene3D - 33 300 IPR036457 -
HCH12g0636 429 FunFam probable protein phosphatase 2C 12 33 300 - -
HCH12g0636 429 SMART PP2C_4 18 292 IPR001932 -
HCH12g0636 429 ProSiteProfiles PPM-type phosphatase domain profile. 32 294 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0636 HCH-Chr12:3825432 HCH8g0076 HCH-Chr8:3901235 4.10E-142 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0636 - - - 0.0