Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0665 | ATGAAGGCCTTAAGCTGCCATTTGTTTATCTCTCTTCTTCTTTTTTCTTCTCTTTGTTTTTTCTCTTCGGCTCTTTCTGACGCCGAAGCTTCTTATATTGCCCGCCGCCAACTTTTAACTTTTCATGAGTTTGATGGTTTGCCTCAAAATTATGAATTTAGTATAAAAATAAAAGAGACATTTCCCAATCCTAGGCTTCGACGAGCTTTTATTGCTCTCCAAGCATGGAAGAAGGCCGTCTATTCCGACCCTTTTAACGCCACCTCCAATTGGGTCGGATCCGATGTTTGTTCTTACACCGGTGTTTTCTGTGCTCCGGCGCTCGATGACCCGAAAATCACCGTCGTTGCCGGAATTGATTTAAATCACGCTGATATCGCCGGATACTTGCCCGTTGAGCTCGGTTTGCTGACTGACATTGCTTTGTTTCATATCAATACCAATCGGTTTTGTGGGATCATTCCGACGAGTTTCTCTAAATTAACACTCCTTCATGAGCTTGACGTCAGCAATAATCGATTTGTCGGATCTTTCCCCGACGTTGTCGTGTCGATTCCGAATCTTAAATATCTCGACATCAGATACAATGATTTTGAAGGGGAATTGCCACCGGAGCTTTTCGAGAAGGAATTGGATGCTATTTTCCTCAATAACAACAGGTTTACGTCGACGATTCCTGAGAATCTTGGGAATTCTCCGGCCTCTGTTATTGTTATAGCGAATAACCAGCTCAAAGGTTGTATTCCGAGCAGTGTCGGGAAAATGGCGAACACGTTGAATGAACTCGTCTTTCTGAATAACGAGTTGGTGGGTTGTTTGCCTTCGGAGATTGGGTTGTTGGGAAACGCGACAGTTTTTGATGTCGCCTCTAATAAATTGAGTGGGTTGTTGCCCAAGAGCTTTGATGGGTTAAAGAGTGTCGTGGAATTCGATGTTTCTAATAATTTGTTGACGGGTTTTGTATCGGAGAGCGTGTGCACGTTGCCTAAATTGGCTAATTTCACGTACTCTTATAATTATTTCAACGGCGCGGCTGATAAGTGTGAGCCACAGAAGAGAAAGGACATTGTGTTGGATGATACTAGCAATTGCTTGCCCGAAAGGCCGAAGCAAAAGTCCGCCAAGGAATGCCAAAAGGTGATTAGCAAGTCTGTGGATTGTAGCAAGGCCAAATGCGGCGGGGGATCGTCGTCGTCGCCTTCGCCGTTGCAGCCATCGAAGCCGAAGCATGGGTCTCCCACGCCTAATCCAAAGGCTCCAGCACCACAGCCCAAGGCTCAACCACCTAAACAAGAGGTTTCTGTTCCTCAGCCACCTAAGCAAGAGGCTCCTAAACCAGAGCCAAAGCCGCAGCCACCGAAACAAGAGGTTCCAAAGCCAGAGCCCCAGCCACCCAACCAAGAGGTTCCTGAACCAGAGCCAAAGCCTCAACCACCAAAACAGGAAGCCCCTGAACCGGAGCCAAAGCCGCAGCCACCCAAGGAAGAAGTTCCTAAGCCAGAGCGGTCACCGGAGCCTGTAACATCTCCGGTACCGGAGCCTGGAAGTCCAGAAACAGAATTAGCACCTTCACCGGATGATCCTTTTGATCAATCACCAGTACCCAGACATAGACCTCCTCCACCACCTCAATCACCCACAGAAGATGCTCCTTCACCGGCGCCGCCTGCAAAATCTCCACCACCACCACCATCACCCGTAAATTCTCCTCCACCACCACCACCGGTTCACTCCCCACCACCTCCAGTACACTCTCCACCTCCCCCGGTTCATTCACCTCCACCACCGGTTCACTCTCCACCACCTCCAGTCCATTCTCCACCACCCCCAGTCCATTCACCACCACCACCACCGGTTTACTCCCCACCACCTCCAGTACACTCTCCACCTCCCCCGGTCCATTCACCTCCACCACCGGTTCACTCTCCACCACCTCCAGTCCATTCTCCACCACCCCCGGTCCATTCACCACCACCACCACCGGTTTACTCACCTCCTCCTCCAGTCCATTCACCACCACCTCCGGTATTCTCTCCGCCACCACCTTCACCATCTCCGTCACCTCCTCCTCCGGTTTTCTCACCACCACCACCGGTAGAAGACATAATCCTTCCTCCAAACTTGGGCTTCCAATACTCATCACCCCCACCACCTCAATTTCCGGGATATTAA | 2172 | 50.09 | MKALSCHLFISLLLFSSLCFFSSALSDAEASYIARRQLLTFHEFDGLPQNYEFSIKIKETFPNPRLRRAFIALQAWKKAVYSDPFNATSNWVGSDVCSYTGVFCAPALDDPKITVVAGIDLNHADIAGYLPVELGLLTDIALFHINTNRFCGIIPTSFSKLTLLHELDVSNNRFVGSFPDVVVSIPNLKYLDIRYNDFEGELPPELFEKELDAIFLNNNRFTSTIPENLGNSPASVIVIANNQLKGCIPSSVGKMANTLNELVFLNNELVGCLPSEIGLLGNATVFDVASNKLSGLLPKSFDGLKSVVEFDVSNNLLTGFVSESVCTLPKLANFTYSYNYFNGAADKCEPQKRKDIVLDDTSNCLPERPKQKSAKECQKVISKSVDCSKAKCGGGSSSSPSPLQPSKPKHGSPTPNPKAPAPQPKAQPPKQEVSVPQPPKQEAPKPEPKPQPPKQEVPKPEPQPPNQEVPEPEPKPQPPKQEAPEPEPKPQPPKEEVPKPERSPEPVTSPVPEPGSPETELAPSPDDPFDQSPVPRHRPPPPPQSPTEDAPSPAPPAKSPPPPPSPVNSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVYSPPPPVHSPPPPVFSPPPPSPSPSPPPPVFSPPPPVEDIILPPNLGFQYSSPPPPQFPGY | 723 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4054514 | 4056685 | - | evm.model.ptg000002l.994 | HCH12g0665 | 555512 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 455 | 477 | - | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 478 | 502 | - | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 528 | 703 | - | - | |
HCH12g0665 | 723 | SUPERFAMILY | L domain-like | 72 | 343 | - | - | |
HCH12g0665 | 723 | Pfam | Leucine Rich Repeat | 187 | 206 | IPR001611 | GO:0005515(InterPro) | |
HCH12g0665 | 723 | Pfam | Leucine rich repeat N-terminal domain | 72 | 104 | IPR013210 | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 391 | 405 | - | - | |
HCH12g0665 | 723 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 11 | 634 | IPR051582 | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 406 | 446 | - | - | |
HCH12g0665 | 723 | FunFam | Leucine-rich repeat extensin-like protein 1 | 70 | 231 | - | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 503 | 521 | - | - | |
HCH12g0665 | 723 | Gene3D | Ribonuclease Inhibitor | 70 | 365 | IPR032675 | - | |
HCH12g0665 | 723 | MobiDBLite | consensus disorder prediction | 387 | 723 | - | - | |
HCH12g0665 | 723 | PRINTS | Pistil-specific extensin-like signature | 576 | 594 | IPR003882 | - | |
HCH12g0665 | 723 | PRINTS | Pistil-specific extensin-like signature | 542 | 565 | IPR003882 | - | |
HCH12g0665 | 723 | PRINTS | Pistil-specific extensin-like signature | 684 | 705 | IPR003882 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0665 | HCH-Chr12:4054514 | HCH13g1116 | HCH-Chr13:36805619 | 1.20E-64 | dispersed | |
HCH12g0665 | HCH-Chr12:4054514 | HCH12g0330 | HCH-Chr12:1904102 | 4.60E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0665 | - | - | - | 0.0 |