Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0665 ATGAAGGCCTTAAGCTGCCATTTGTTTATCTCTCTTCTTCTTTTTTCTTCTCTTTGTTTTTTCTCTTCGGCTCTTTCTGACGCCGAAGCTTCTTATATTGCCCGCCGCCAACTTTTAACTTTTCATGAGTTTGATGGTTTGCCTCAAAATTATGAATTTAGTATAAAAATAAAAGAGACATTTCCCAATCCTAGGCTTCGACGAGCTTTTATTGCTCTCCAAGCATGGAAGAAGGCCGTCTATTCCGACCCTTTTAACGCCACCTCCAATTGGGTCGGATCCGATGTTTGTTCTTACACCGGTGTTTTCTGTGCTCCGGCGCTCGATGACCCGAAAATCACCGTCGTTGCCGGAATTGATTTAAATCACGCTGATATCGCCGGATACTTGCCCGTTGAGCTCGGTTTGCTGACTGACATTGCTTTGTTTCATATCAATACCAATCGGTTTTGTGGGATCATTCCGACGAGTTTCTCTAAATTAACACTCCTTCATGAGCTTGACGTCAGCAATAATCGATTTGTCGGATCTTTCCCCGACGTTGTCGTGTCGATTCCGAATCTTAAATATCTCGACATCAGATACAATGATTTTGAAGGGGAATTGCCACCGGAGCTTTTCGAGAAGGAATTGGATGCTATTTTCCTCAATAACAACAGGTTTACGTCGACGATTCCTGAGAATCTTGGGAATTCTCCGGCCTCTGTTATTGTTATAGCGAATAACCAGCTCAAAGGTTGTATTCCGAGCAGTGTCGGGAAAATGGCGAACACGTTGAATGAACTCGTCTTTCTGAATAACGAGTTGGTGGGTTGTTTGCCTTCGGAGATTGGGTTGTTGGGAAACGCGACAGTTTTTGATGTCGCCTCTAATAAATTGAGTGGGTTGTTGCCCAAGAGCTTTGATGGGTTAAAGAGTGTCGTGGAATTCGATGTTTCTAATAATTTGTTGACGGGTTTTGTATCGGAGAGCGTGTGCACGTTGCCTAAATTGGCTAATTTCACGTACTCTTATAATTATTTCAACGGCGCGGCTGATAAGTGTGAGCCACAGAAGAGAAAGGACATTGTGTTGGATGATACTAGCAATTGCTTGCCCGAAAGGCCGAAGCAAAAGTCCGCCAAGGAATGCCAAAAGGTGATTAGCAAGTCTGTGGATTGTAGCAAGGCCAAATGCGGCGGGGGATCGTCGTCGTCGCCTTCGCCGTTGCAGCCATCGAAGCCGAAGCATGGGTCTCCCACGCCTAATCCAAAGGCTCCAGCACCACAGCCCAAGGCTCAACCACCTAAACAAGAGGTTTCTGTTCCTCAGCCACCTAAGCAAGAGGCTCCTAAACCAGAGCCAAAGCCGCAGCCACCGAAACAAGAGGTTCCAAAGCCAGAGCCCCAGCCACCCAACCAAGAGGTTCCTGAACCAGAGCCAAAGCCTCAACCACCAAAACAGGAAGCCCCTGAACCGGAGCCAAAGCCGCAGCCACCCAAGGAAGAAGTTCCTAAGCCAGAGCGGTCACCGGAGCCTGTAACATCTCCGGTACCGGAGCCTGGAAGTCCAGAAACAGAATTAGCACCTTCACCGGATGATCCTTTTGATCAATCACCAGTACCCAGACATAGACCTCCTCCACCACCTCAATCACCCACAGAAGATGCTCCTTCACCGGCGCCGCCTGCAAAATCTCCACCACCACCACCATCACCCGTAAATTCTCCTCCACCACCACCACCGGTTCACTCCCCACCACCTCCAGTACACTCTCCACCTCCCCCGGTTCATTCACCTCCACCACCGGTTCACTCTCCACCACCTCCAGTCCATTCTCCACCACCCCCAGTCCATTCACCACCACCACCACCGGTTTACTCCCCACCACCTCCAGTACACTCTCCACCTCCCCCGGTCCATTCACCTCCACCACCGGTTCACTCTCCACCACCTCCAGTCCATTCTCCACCACCCCCGGTCCATTCACCACCACCACCACCGGTTTACTCACCTCCTCCTCCAGTCCATTCACCACCACCTCCGGTATTCTCTCCGCCACCACCTTCACCATCTCCGTCACCTCCTCCTCCGGTTTTCTCACCACCACCACCGGTAGAAGACATAATCCTTCCTCCAAACTTGGGCTTCCAATACTCATCACCCCCACCACCTCAATTTCCGGGATATTAA 2172 50.09 MKALSCHLFISLLLFSSLCFFSSALSDAEASYIARRQLLTFHEFDGLPQNYEFSIKIKETFPNPRLRRAFIALQAWKKAVYSDPFNATSNWVGSDVCSYTGVFCAPALDDPKITVVAGIDLNHADIAGYLPVELGLLTDIALFHINTNRFCGIIPTSFSKLTLLHELDVSNNRFVGSFPDVVVSIPNLKYLDIRYNDFEGELPPELFEKELDAIFLNNNRFTSTIPENLGNSPASVIVIANNQLKGCIPSSVGKMANTLNELVFLNNELVGCLPSEIGLLGNATVFDVASNKLSGLLPKSFDGLKSVVEFDVSNNLLTGFVSESVCTLPKLANFTYSYNYFNGAADKCEPQKRKDIVLDDTSNCLPERPKQKSAKECQKVISKSVDCSKAKCGGGSSSSPSPLQPSKPKHGSPTPNPKAPAPQPKAQPPKQEVSVPQPPKQEAPKPEPKPQPPKQEVPKPEPQPPNQEVPEPEPKPQPPKQEAPEPEPKPQPPKEEVPKPERSPEPVTSPVPEPGSPETELAPSPDDPFDQSPVPRHRPPPPPQSPTEDAPSPAPPAKSPPPPPSPVNSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVYSPPPPVHSPPPPVFSPPPPSPSPSPPPPVFSPPPPVEDIILPPNLGFQYSSPPPPQFPGY 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4054514 4056685 - evm.model.ptg000002l.994 HCH12g0665 555512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0665 723 MobiDBLite consensus disorder prediction 455 477 - -
HCH12g0665 723 MobiDBLite consensus disorder prediction 478 502 - -
HCH12g0665 723 MobiDBLite consensus disorder prediction 528 703 - -
HCH12g0665 723 SUPERFAMILY L domain-like 72 343 - -
HCH12g0665 723 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
HCH12g0665 723 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
HCH12g0665 723 MobiDBLite consensus disorder prediction 391 405 - -
HCH12g0665 723 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 634 IPR051582 -
HCH12g0665 723 MobiDBLite consensus disorder prediction 406 446 - -
HCH12g0665 723 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
HCH12g0665 723 MobiDBLite consensus disorder prediction 503 521 - -
HCH12g0665 723 Gene3D Ribonuclease Inhibitor 70 365 IPR032675 -
HCH12g0665 723 MobiDBLite consensus disorder prediction 387 723 - -
HCH12g0665 723 PRINTS Pistil-specific extensin-like signature 576 594 IPR003882 -
HCH12g0665 723 PRINTS Pistil-specific extensin-like signature 542 565 IPR003882 -
HCH12g0665 723 PRINTS Pistil-specific extensin-like signature 684 705 IPR003882 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0665 HCH-Chr12:4054514 HCH13g1116 HCH-Chr13:36805619 1.20E-64 dispersed
HCH12g0665 HCH-Chr12:4054514 HCH12g0330 HCH-Chr12:1904102 4.60E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0665 - - - 0.0