Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0669 ATGTTTCTAAGCTCAAACTTTATGATGAAAAAGAAAACTATGTCTCCTATTCCAGACCTCTCCTTACAGATCAGCCCTCCTTCAGTCCCAATAGATGAAAAAGCTATGGCTAATATGGCTGTTTATAATCATGGAAGCTCAACCACTGATTCTGGTTGCAGTGGAAGCGATTTAAGCCATGAAAATGGTTTCTTCCCGTCTTTGAGATTAGGGTTTGAAGTTTCGGATTCCTGTCTTCCTCGTCTGCAGCAGCAAACTCACTACGCCTTCCATGGCCGCCGAGACTTCATTAAGAGAAGCGGAGCGAGAATGGGGTGTGGAGTTAGAAGGAGTATTAGAGCTCCGAGAATGAGATGGACGACGACTCTTCATGCTCATTTTGTACACGCAGTCGAGCTTCTTGGAGGCCATGAAAGAGCTACGCCGAAATCAGTATTGGAGCTGATGAATGTCAAGGATCTAACCCTAGCTCACGTCAAAAGTCATTTGCAGATGTATAGAACAGTGAAGAACACTGCAAAGGGAATAGATGATCGTCAAATGGCGCCAGAGATTGACCCAAATCCAGAATTGGATGCCATTGTTTCTTCTTCTTCTGCTCAAAATTCTAAGCCACAATCGTCATTGCAGAGATTCCAAAGGTCAGTTCCTGTGAGTAGTTTGTCATCAAACGACGACGCTTTTACCAAATCGAGGGGAATTAAGGTTGAAGTAAATAACAGAGATTACCACGATTACCAAATCCAGAGCATGCAACGGATCAATTTAGAGTTTACTCTTGGAAGGCAAAGCTGGTTAAATTCCATGAGCTAG 813 43.3 MFLSSNFMMKKKTMSPIPDLSLQISPPSVPIDEKAMANMAVYNHGSSTTDSGCSGSDLSHENGFFPSLRLGFEVSDSCLPRLQQQTHYAFHGRRDFIKRSGARMGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTAKGIDDRQMAPEIDPNPELDAIVSSSSAQNSKPQSSLQRFQRSVPVSSLSSNDDAFTKSRGIKVEVNNRDYHDYQIQSMQRINLEFTLGRQSWLNSMS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4090619 4093215 + evm.model.ptg000002l.990 HCH12g0669 555516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0669 270 MobiDBLite consensus disorder prediction 174 226 - -
HCH12g0669 270 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 266 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
HCH12g0669 270 Pfam Myb-like DNA-binding domain 116 167 IPR001005 -
HCH12g0669 270 FunFam Myb family transcription factor 113 171 - -
HCH12g0669 270 MobiDBLite consensus disorder prediction 192 226 - -
HCH12g0669 270 Gene3D - 114 171 - -
HCH12g0669 270 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 168 IPR006447 GO:0003677(InterPro)
HCH12g0669 270 SUPERFAMILY Homeodomain-like 112 169 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0669 HCH-Chr12:4090619 HCH6g1137 HCH-Chr6:45936702 6.50E-29 dispersed
HCH12g0905 HCH-Chr12:6093822 HCH12g0669 HCH-Chr12:4090619 8.70E-17 transposed
HCH1g0135 HCH-Chr1:10078935 HCH12g0669 HCH-Chr12:4090619 1.40E-17 transposed
HCH12g0669 HCH-Chr12:4090619 HCH4g0682 HCH-Chr4:4433593 4.80E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32694 PF00249 Myb_DNA-binding 1.20E-05 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0669 - - - 0.0