Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0669 ATGTTTCTAAGCTCAAACTTTATGATGAAAAAGAAAACTATGTCTCCTATTCCAGACCTCTCCTTACAGATCAGCCCTCCTTCAGTCCCAATAGATGAAAAAGCTATGGCTAATATGGCTGTTTATAATCATGGAAGCTCAACCACTGATTCTGGTTGCAGTGGAAGCGATTTAAGCCATGAAAATGGTTTCTTCCCGTCTTTGAGATTAGGGTTTGAAGTTTCGGATTCCTGTCTTCCTCGTCTGCAGCAGCAAACTCACTACGCCTTCCATGGCCGCCGAGACTTCATTAAGAGAAGCGGAGCGAGAATGGGGTGTGGAGTTAGAAGGAGTATTAGAGCTCCGAGAATGAGATGGACGACGACTCTTCATGCTCATTTTGTACACGCAGTCGAGCTTCTTGGAGGCCATGAAAGAGCTACGCCGAAATCAGTATTGGAGCTGATGAATGTCAAGGATCTAACCCTAGCTCACGTCAAAAGTCATTTGCAGATGTATAGAACAGTGAAGAACACTGCAAAGGGAATAGATGATCGTCAAATGGCGCCAGAGATTGACCCAAATCCAGAATTGGATGCCATTGTTTCTTCTTCTTCTGCTCAAAATTCTAAGCCACAATCGTCATTGCAGAGATTCCAAAGGTCAGTTCCTGTGAGTAGTTTGTCATCAAACGACGACGCTTTTACCAAATCGAGGGGAATTAAGGTTGAAGTAAATAACAGAGATTACCACGATTACCAAATCCAGAGCATGCAACGGATCAATTTAGAGTTTACTCTTGGAAGGCAAAGCTGGTTAAATTCCATGAGCTAG 813 43.3 MFLSSNFMMKKKTMSPIPDLSLQISPPSVPIDEKAMANMAVYNHGSSTTDSGCSGSDLSHENGFFPSLRLGFEVSDSCLPRLQQQTHYAFHGRRDFIKRSGARMGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTAKGIDDRQMAPEIDPNPELDAIVSSSSAQNSKPQSSLQRFQRSVPVSSLSSNDDAFTKSRGIKVEVNNRDYHDYQIQSMQRINLEFTLGRQSWLNSMS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4090619 4093215 + evm.model.ptg000002l.990 HCH12g0669 555516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0669 270 MobiDBLite consensus disorder prediction 174 226 - -
HCH12g0669 270 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 266 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
HCH12g0669 270 Pfam Myb-like DNA-binding domain 116 167 IPR001005 -
HCH12g0669 270 FunFam Myb family transcription factor 113 171 - -
HCH12g0669 270 MobiDBLite consensus disorder prediction 192 226 - -
HCH12g0669 270 Gene3D - 114 171 - -
HCH12g0669 270 NCBIfam myb-like DNA-binding domain, SHAQKYF class 115 168 IPR006447 GO:0003677(InterPro)
HCH12g0669 270 SUPERFAMILY Homeodomain-like 112 169 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0669 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0669 HCH-Chr12:4090619 HCH6g1137 HCH-Chr6:45936702 6.50E-29 dispersed
HCH12g0905 HCH-Chr12:6093822 HCH12g0669 HCH-Chr12:4090619 8.70E-17 transposed
HCH1g0135 HCH-Chr1:10078935 HCH12g0669 HCH-Chr12:4090619 1.40E-17 transposed
HCH12g0669 HCH-Chr12:4090619 HCH4g0682 HCH-Chr4:4433593 4.80E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32694 PF00249 Myb_DNA-binding 1.20E-05 CL0123 HCH TF