Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0669 | ATGTTTCTAAGCTCAAACTTTATGATGAAAAAGAAAACTATGTCTCCTATTCCAGACCTCTCCTTACAGATCAGCCCTCCTTCAGTCCCAATAGATGAAAAAGCTATGGCTAATATGGCTGTTTATAATCATGGAAGCTCAACCACTGATTCTGGTTGCAGTGGAAGCGATTTAAGCCATGAAAATGGTTTCTTCCCGTCTTTGAGATTAGGGTTTGAAGTTTCGGATTCCTGTCTTCCTCGTCTGCAGCAGCAAACTCACTACGCCTTCCATGGCCGCCGAGACTTCATTAAGAGAAGCGGAGCGAGAATGGGGTGTGGAGTTAGAAGGAGTATTAGAGCTCCGAGAATGAGATGGACGACGACTCTTCATGCTCATTTTGTACACGCAGTCGAGCTTCTTGGAGGCCATGAAAGAGCTACGCCGAAATCAGTATTGGAGCTGATGAATGTCAAGGATCTAACCCTAGCTCACGTCAAAAGTCATTTGCAGATGTATAGAACAGTGAAGAACACTGCAAAGGGAATAGATGATCGTCAAATGGCGCCAGAGATTGACCCAAATCCAGAATTGGATGCCATTGTTTCTTCTTCTTCTGCTCAAAATTCTAAGCCACAATCGTCATTGCAGAGATTCCAAAGGTCAGTTCCTGTGAGTAGTTTGTCATCAAACGACGACGCTTTTACCAAATCGAGGGGAATTAAGGTTGAAGTAAATAACAGAGATTACCACGATTACCAAATCCAGAGCATGCAACGGATCAATTTAGAGTTTACTCTTGGAAGGCAAAGCTGGTTAAATTCCATGAGCTAG | 813 | 43.3 | MFLSSNFMMKKKTMSPIPDLSLQISPPSVPIDEKAMANMAVYNHGSSTTDSGCSGSDLSHENGFFPSLRLGFEVSDSCLPRLQQQTHYAFHGRRDFIKRSGARMGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTAKGIDDRQMAPEIDPNPELDAIVSSSSAQNSKPQSSLQRFQRSVPVSSLSSNDDAFTKSRGIKVEVNNRDYHDYQIQSMQRINLEFTLGRQSWLNSMS | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4090619 | 4093215 | + | evm.model.ptg000002l.990 | HCH12g0669 | 555516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0669 | 270 | MobiDBLite | consensus disorder prediction | 174 | 226 | - | - | |
HCH12g0669 | 270 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 11 | 266 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
HCH12g0669 | 270 | Pfam | Myb-like DNA-binding domain | 116 | 167 | IPR001005 | - | |
HCH12g0669 | 270 | FunFam | Myb family transcription factor | 113 | 171 | - | - | |
HCH12g0669 | 270 | MobiDBLite | consensus disorder prediction | 192 | 226 | - | - | |
HCH12g0669 | 270 | Gene3D | - | 114 | 171 | - | - | |
HCH12g0669 | 270 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 115 | 168 | IPR006447 | GO:0003677(InterPro) | |
HCH12g0669 | 270 | SUPERFAMILY | Homeodomain-like | 112 | 169 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0669 | HCH-Chr12:4090619 | HCH6g1137 | HCH-Chr6:45936702 | 6.50E-29 | dispersed | |
HCH12g0905 | HCH-Chr12:6093822 | HCH12g0669 | HCH-Chr12:4090619 | 8.70E-17 | transposed | |
HCH1g0135 | HCH-Chr1:10078935 | HCH12g0669 | HCH-Chr12:4090619 | 1.40E-17 | transposed | |
HCH12g0669 | HCH-Chr12:4090619 | HCH4g0682 | HCH-Chr4:4433593 | 4.80E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32694 | PF00249 | Myb_DNA-binding | 1.20E-05 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0669 | - | - | - | 0.0 |