Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0671 ATGGAAAACGTTTTCCAGTATCTCAATAGCTCCACAGTTGGATTATTTGCCTTGCTTCTTTTTTCCTACTTCGTTTTAAAGAATGCTAGAGCAAGTAAACATAGAGAAGCCCCTGAAGCAGGTGGTGGATGGCCAATAATCGGTCACCTGCGACTTCTCCGCGGTTCGCAACTTCCCCACATAACCTTGGGAGCTTTGGCTGACAAGTATGGACCGATATTCAGTATCCGAATCGGTGTGCATAGAAGCCTCGTTATAAGTAGTTGGGAAGTAGCTAAAGAGTGCTACACCACCCATGATTCAGTTGTCTCTTCACGTCCCAAAACTTTGGCAGGAAAACTTTTGGGCTATGATTTTGCTAGTTTTGGGACCAGGGGTTATGATTCCTATTGGCGCAATATGCGTAAAATCATAGCCTCCGAGCTGTTGTCGAACCGATGCCTCGAGTTGCAAAGACATATTCGAGTTTCTGAGGTGAAGAGATCAGTGAAGGAGCTTTACAATATGTGGACTAAGAGAGATGAAGGATCGGACCACATACTTGTTGATGTAGACCAATGGATAGGAAATGTTAATCTAAATGTGATTCTAATGATGGTTTGTGGAAAGCGATTCTCTGGGAGTTCTAGCAATGAGGAGGAGGTGAGAAGATGTCGTGAAGCGATGAGAGATTTATTTGAACTGATGGGGCAGTTCGTGGTGGGAGACGCCATTCCTTTTCTAAGATGGTTGGATTTAGGTGGATATAAGAAGGCCATGAAGAAAACTGCAAAAGAATTGGACAGTCTTGTTGAGGGATGGTTGGAAGAACATCGTCGGAAGCGAGACTCCGGTGCGACTGATGGTGATCGCGACTTCATGGATGTGATGCTATCGATTCTTGAAGGGACTGATCTTGCTGGTTACGATGCTGATACCGTCAACAAAGCGACGTGCATGGGTATTATTTCTGGGGGAACTGATACAACAACTGTAACCTTAACTTGGGCGATATCGCTGTTGCTGAATAATCGAGAGGCATTGAGAAAGGCTCAAGAGGAGCTAGATATCCATGTTGGCAGCAAAAGACTAATAGAAGAATCAGACATAAGCAAATTGGAGTATCTGCAAGCCATAGTTAAAGAGACATTAAGGTTGTATCCAGCAGGACCACTATCCGGGAGTAGAGAATTCACCCAGGACTGCACATTAGGAGGCTACCACGTCCCAGCCGGCACACGGCTCATCACAAACCTTTGGAAGATACAAACCGATCCTCGGGTGTGGTCGGAGCCGCTCGAGTTCAAGCCGGAGAGGTTTCTAAGTAGCCACAAGGAGGTAGATGTGAAGGGGCAGAATTTTGAGCTGATACCATTTGGTGGTGGAAGAAGAGCTTGTCCTGGATTGGGGTATGGAGTTCAAATGACACAATTGGTGTTAGCTAGTTTGATTCATTCATTCGACCTATCAAATGGATTCAACGAAGAAGTTGATATGAACGCTGAATTTGGACTCACAATTCATAGAACATCCCCACTTCAAGTTCTGGCCAAACCACGCCTATTACAGAATGCTTATAATGCATGA 1566 44.96 MENVFQYLNSSTVGLFALLLFSYFVLKNARASKHREAPEAGGGWPIIGHLRLLRGSQLPHITLGALADKYGPIFSIRIGVHRSLVISSWEVAKECYTTHDSVVSSRPKTLAGKLLGYDFASFGTRGYDSYWRNMRKIIASELLSNRCLELQRHIRVSEVKRSVKELYNMWTKRDEGSDHILVDVDQWIGNVNLNVILMMVCGKRFSGSSSNEEEVRRCREAMRDLFELMGQFVVGDAIPFLRWLDLGGYKKAMKKTAKELDSLVEGWLEEHRRKRDSGATDGDRDFMDVMLSILEGTDLAGYDADTVNKATCMGIISGGTDTTTVTLTWAISLLLNNREALRKAQEELDIHVGSKRLIEESDISKLEYLQAIVKETLRLYPAGPLSGSREFTQDCTLGGYHVPAGTRLITNLWKIQTDPRVWSEPLEFKPERFLSSHKEVDVKGQNFELIPFGGGRRACPGLGYGVQMTQLVLASLIHSFDLSNGFNEEVDMNAEFGLTIHRTSPLQVLAKPRLLQNAYNA 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4097636 4099293 + evm.model.ptg000002l.988 HCH12g0671 555518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0671 521 FunFam Cytochrome P450 82C4 27 511 - -
HCH12g0671 521 SUPERFAMILY Cytochrome P450 43 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 Pfam Cytochrome P450 41 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PANTHER CYTOCHROME P450 82C3-RELATED 15 516 IPR050651 -
HCH12g0671 521 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 CDD CYP82 71 513 - -
HCH12g0671 521 Gene3D Cytochrome P450 27 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0671 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0237 HCH-Chr12:1318110 HCH12g0671 HCH-Chr12:4097636 3.60E-153 dispersed
HCH12g0238 HCH-Chr12:1322832 HCH12g0671 HCH-Chr12:4097636 1.10E-141 dispersed
HCH12g0671 HCH-Chr12:4097636 HCH12g0675 HCH-Chr12:4115860 1.60E-164 dispersed
HCH12g0670 HCH-Chr12:4095373 HCH12g0671 HCH-Chr12:4097636 7.00E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0671 - - - 0.0