Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0693 ATGGCTTGTAAGCTCCTGATGCCTCCTTTAATAGCTTCTTTTCTCATACTTATAGCCCTTTTCACCTCTTCATCTGCTGAAAATGATTCTCTCACTACTCTTCTCTCTCCAAAAGCCATTTGCAAGTCCACCTCTAATCTTCCCTACTGCATCTCTGTGCTTAAAAAGAATCAAAACTCAACGGCCAATGTCTATGAGAATGGGAGGTTTTCGGTCCGTCGTTCATTGTCTAAAGCAGTTCGCTTTCTCAACTTGATTGAGAAGTATCTGCAAAGCAGTTTGGGTCTGCCAAAATCCATAATTGGAGCATTGGCGGATTGTAAGTATCTTGCCAAGGTGAACATCGATTTCTTGTCGAGTTCCTTCCGTTTTATCAACGGTACTAATGAAAAACTAGCTTACTCAAAGGCTGATTATGTCCAGAGTCTGCTTAGTGCCATCTTAACCAACATTGATACTTGTTTGGATGGCCTAAAAATGGCAGCTTCAGGTTCAAGTTTGGAGAAAGGTCTCTTATCCCCACTCACTGACTGCACCAATTCTTACAGTATTTCTCTAGCTCTTTTTACCAAGGGTTGGGTTCCCAGGAATAGAAGCACAGCTTTTGAGCACACTGGGAAACATCGCCGGTTTAGGAAAGGACCCTTACCATTGAGAATGTCGAGACACAACCGTGAAATTTATGGCTCAGCGGTGAATCGGAGAAAGCTTTCATCTTCTACAGATGATGATGATGGAGTTTTGATTAACGGCATTGTAGTTGTGAGTCAAGATGGTGAAGGAAACTTCATCACTATCAACGATGCCGTCAATGCAGCTCCAAACAACACCGTTGCTGCCAATGGCTACTTCTTGATTTACATTACAGCCGGTGTTTACCACGAATATGTGTCGATCCCGGCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAACCAGACTATAATCACCGGAAATCAAAGCGTTGTAGACGGGTGGACGACTTTCAATAGCGCAACATTTGCTGTTTCAGGAGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACACAGCTGGACCAAGCAAGGGACAAGCAGTTGCATTAAGAAACGGGGCTGACATGTCTACCTTCTACAGCTGCAGCTTTGAGGGGTATCAAGACACCTTATACACACACTCCCTCAGGCAATTCTATAGAGAATGTGATATCTATGGGACAGTGGACTTCATATTTGGAAATGCAGCTGTTGTTTTCCAAAACTGCAACCTATATCCCCGCCTACCTCGTCCCGGGCAAGCCAATATGATCACTGCCCAAGGTCGATCGGACCCGAACCAAAACACGGGTACTTCGATCCACAATTGCACGATCCAACCCACGAGTGATCTGGCTACGAGCAACGGTACCAAGACAAAGACATATCTGGGCAGGCCATGGAAGCAATATTCAAGAACAGTATATATGAAGTCGTTCATAGACGGTTTTATAAATCCGGCGGGCTGGGATCCGTGGTCGGGCGAGTTTTTGAGCACATTGTACTATGGTGAGTATGATAATAGAGGAGTTGGATCAAACACAAGTAGCAGAGTGAATTGGCCTGGTTACCATGTGATTAATGCTACAGATTCTGCTAATTTTACAGTTTCAAACTTCTTGGTTGGAGATGTCTGGCTGCCTAGAACTGCTGTGCCTTATACTGGAGGCTTGATATAA 1701 44.09 MACKLLMPPLIASFLILIALFTSSSAENDSLTTLLSPKAICKSTSNLPYCISVLKKNQNSTANVYENGRFSVRRSLSKAVRFLNLIEKYLQSSLGLPKSIIGALADCKYLAKVNIDFLSSSFRFINGTNEKLAYSKADYVQSLLSAILTNIDTCLDGLKMAASGSSLEKGLLSPLTDCTNSYSISLALFTKGWVPRNRSTAFEHTGKHRRFRKGPLPLRMSRHNREIYGSAVNRRKLSSSTDDDDGVLINGIVVVSQDGEGNFITINDAVNAAPNNTVAANGYFLIYITAGVYHEYVSIPAKKKYLLMIGDGINQTIITGNQSVVDGWTTFNSATFAVSGEGFMAVNITFQNTAGPSKGQAVALRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPRPGQANMITAQGRSDPNQNTGTSIHNCTIQPTSDLATSNGTKTKTYLGRPWKQYSRTVYMKSFIDGFINPAGWDPWSGEFLSTLYYGEYDNRGVGSNTSSRVNWPGYHVINATDSANFTVSNFLVGDVWLPRTAVPYTGGLI 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4243764 4245575 - evm.model.ptg000002l.966 HCH12g0693 555540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0693 566 Gene3D - 251 566 IPR012334 -
HCH12g0693 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 191 IPR035513 -
HCH12g0693 566 SUPERFAMILY Pectin lyase-like 249 564 IPR011050 -
HCH12g0693 566 PANTHER PECTINESTERASE 14 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH12g0693 566 Pfam Plant invertase/pectin methylesterase inhibitor 38 188 IPR006501 GO:0004857(InterPro)
HCH12g0693 566 SMART PMEI_2 32 188 IPR006501 GO:0004857(InterPro)
HCH12g0693 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
HCH12g0693 566 NCBIfam pectinesterase inhibitor domain 12 161 IPR006501 GO:0004857(InterPro)
HCH12g0693 566 CDD PMEI-like_3 39 193 - -
HCH12g0693 566 FunFam Pectinesterase 248 565 - -
HCH12g0693 566 Pfam Pectinesterase 253 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH12g0693 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 191 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0693 HCH-Chr12:4243764 HCH4g1043 HCH-Chr4:6725578 1.50E-189 dispersed
HCH12g0693 HCH-Chr12:4243764 HCH4g1042 HCH-Chr4:6698670 1.30E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0693 K01051 - csv:101205879 868.996