Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0696 ATGTTCCCCATCTCTAAGCCCCACCACCAACAACCCTCCCATTCCCCTCCTTTCCCCCACTCCTTATCCGCCGCCGCCGACAACGATACCACCGCCCATGTCATGTCTGCCTCCGGCGACGGCACCACCATTGACGTGGTACGTCGCTCACGCGGCCGCCCTCCTGGCTCAAAGAACCGACCCAAACCGCCCGTTATCGTAACCCGCGAACCTGAACCGGCTATGAACCCTTATATTCTTGAAATTCCAGTCGGTAGTGATATCGTTGAAGCAATCTCCCGCTTTTGCCTCCGTAAAAACACCGGCCTTTGTATTCTCACCGGTTACGGAACTGTCTCTAACGTTACTCTCCGGCAGCCGTCTGCGACGGCCGGGGCTAACATTACTTTCCATGGACTTTTTGATATTTTATCAGTTAGCGCTACGTTTCTTCCGGTCACGACGTCTTTTTCCGTCCCGAATGGGTTCACTATCACGCTAGCGGGCCCACAAGGGCAGATCTTCGGTGGGTTGGTCGCCGGAACCCTAGTTACCGCCGGGACTGTGTATGTAATTGCTGCGTCGTTTAATAATCCGTTGTATCAACGGTTACCGGTGGAAGATAAGGGAAGAAAGTCGGTCTCCGGCGATGGCGAAGAGGGGCAGTCGCCATCGGTATCGGGCGGGAAAGATAGTGAGGGACACGTGGCGGTTACGGAGACGTGTGGATTGCCGATGTTCAGCAATCATTTATCTTCCGACGTGATTTGGGCTCCGACGGCTAGACAACCGCCGTCGCATCATCGTCCGTACTGA 795 55.09 MFPISKPHHQQPSHSPPFPHSLSAAADNDTTAHVMSASGDGTTIDVVRRSRGRPPGSKNRPKPPVIVTREPEPAMNPYILEIPVGSDIVEAISRFCLRKNTGLCILTGYGTVSNVTLRQPSATAGANITFHGLFDILSVSATFLPVTTSFSVPNGFTITLAGPQGQIFGGLVAGTLVTAGTVYVIAASFNNPLYQRLPVEDKGRKSVSGDGEEGQSPSVSGGKDSEGHVAVTETCGLPMFSNHLSSDVIWAPTARQPPSHHRPY 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4263390 4264184 - evm.model.ptg000002l.963 HCH12g0696 555543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0696 264 MobiDBLite consensus disorder prediction 8 38 - -
HCH12g0696 264 MobiDBLite consensus disorder prediction 200 227 - -
HCH12g0696 264 MobiDBLite consensus disorder prediction 1 70 - -
HCH12g0696 264 ProSiteProfiles PPC domain profile profile. 72 210 IPR005175 -
HCH12g0696 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 191 IPR005175 -
HCH12g0696 264 PIRSF ESCAROLA 3 256 IPR014476 GO:0003680(InterPro)
HCH12g0696 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 226 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH12g0696 264 Gene3D - 75 209 - -
HCH12g0696 264 CDD DUF296 76 189 IPR005175 -
HCH12g0696 264 FunFam AT-hook motif nuclear-localized protein 76 208 - -
HCH12g0696 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0696 HCH-Chr12:4263390 HCH7g1551 HCH-Chr7:47972397 2.00E-43 dispersed
HCH12g0696 HCH-Chr12:4263390 HCH4g0281 HCH-Chr4:1807341 1.40E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0696 - - - 0.0