Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0705 | ATGCCGCATAGAACGACTTACTTCTTCCCGAGGCAATTTCCGGATCGTGGATTTGACTCTGCGTCAACTTCCAAGCAGTCTTTAGATCACGAGAAAACCAAACTCAATAACAGCAGCAGCAGCAGCAAAGAAACTTTTACTTCCGCTGAAAACGACGCGAAACCGCCCGCACGTGACTTATCCGTGACCAAAACCTCGCCTGTTTCCGATCGTTTCACGGGCGATAAAGCTCAAACCAATAACAACAATAGGAATAAGAAACTTCCTGCTTTTTACGACTGGTTCGCGGAAAAGAAGGCAGCTTCTGCACGATCACGATCACGATCTTCACACGTGAAAACATGGCTTTCGAATTGCGATGAAGATCGGGAGCTTTTGCTGCCGCCGCCGCCGGAAACTGAGAATGAAATCACGACGGTGGGTAAGGATGATCGGAATGTTGATCGGAACTTTGACCGGCAAGTTTCATTGCCTAGGGTTTCGAGTGGGAGTAGTTATGCGGGGAGTTTGTTTTCGGGGACGGGGACGGAGAATGGGAACGGGAATTTCTCGAGCGATATGAAGGATTCGACGGTGTCGAAGAATTTGTCTTTGGCTACGGTTAGGCAAGAGGAGATAGAAGGTGGAAATGAGGCGGAGGAGGAGGAGGAGGAGGAGAAAGAGAGCTTAGCGCAGAGAGTGAAAGAGAGTTATTATTTGCAACTTGCTTTGGCTAGAACGCTTAGTTCTAATGTTGGTCTTGCTGGAGATTCTGTGGTTATGCAAGAAGGGAGGGTCGAAATTACTGATACTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCTTGTCTTACTCTGACAAAATATCAGATGGGTTCTACAATATATTGGGTATGAATCCATATCTGTGGGTTATGTGCAATGATATCGATGAAGGTAAAAGGCTACCACCACTGATGTCACTTAGAGCCATTGAGCCAAGTGAGACATCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCGAGACTTAAAGAGCTTGAAGACAAAGCACAAGAATTATATTGTGCTTCAGAGAACACCTTAGTTCTGGTGGAGAAACTTGGGAAACTTGTTGCCATCTATATGGGTGGCACTTTCCCGGTGGAGCAAGGAGGGCTGCACTTGCATTGGAAAGTTGTGAGTAGAAGGTTGAGGGAATTTCAGAAATGCATAGTGCTTCCTATTGGTAGTCTGTCTATGGGTCTATGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGAATAGCCAAGGGTTGCAAGTATTGTGTTGCAGATCATCGATCTTCTTGCCTTGTCAAAATTGAAGATGACAGGCAATCCTTGAGGGAATATGTTGTTGATTTAGTTGGGGAACCAGGAAATTTACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCTTTCTTCGATGCCTTCACCACTTCAAATTTCTCATTTGAAAGAGTTTCAAGAACCTTATGTGGACAGTTCTTTAAGTCGTCAAAAGATTGGCCCGAGGCACAGTTGTGCCTTTCCTGAAGATCTTCCATATTCAGGCTATAGAGACCACCAAAAAAAGGGAAGTATTTTACATTCAAGGGCAGAAACTGATAATTTGGTTGATCAAGCTTGTAATGGTATGAGATCATCTCAGCTACTTTTGAGAACAAAAGTGAGTGAACAGTGTATGGTGCTTCAGAGTCATATATTGCCATCTGCTGATGCTGATGCCTCTAAGGTGTTGGATTCTGTCGCTGGTGCTTCTATGCATGAAAACAAAGTTGTCATCGAAGAAATATACCGAAAAGCGGCAATTGTGTCGGAGATTTCACTAAATGATTGTACTACCGATGAACCCAAGCTAAGCTTGTCCACTCAGTCTGGTTCAAAGGAGGTTGGAAGTAGATCTGAAAATCATTCAGCATCAACAATTCCTAAATATTTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGTGCTGGCTCATTTGGTACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAAGATTTCCAAGATGATCAGTTGAAGGAGTTTCTTAGAGAGGTTGCGATAATGAAGCGGGTCCGCCATCCAAATGTGGTTCTGTTCATGGGCGCAGTTACAAAGCGCCCCCATCTGTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTCTATAGGCTAATTCACAGGCCATCTTCTGGTGAACTGATGGATCAAAGAAAGCGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACACTGTCTCAATCCTCCTATAGTACATTGGGATCTTAAATCTCCTAATTTGCTGGTTGACAAGAATTGGACAGTCAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCTGAATTCCTTCGAGGAGAGCCTTCAAATGAGACGTCAGATGTTTACAGTTTCGGCGTGATTCTTTGGGAACTAGTAACCATGCAACAGCCTTGGAGTGGACTTGGCCCTGCTCAGGTTGTGGGAGCTGTCGCCTTCCAAAATAGAAGGCTTTCTATTCCATCAAATACTTCTCCATTGCTGTCTTCCCTAATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCTAGCATAGTTGAGTCGCTGAAGAAATTGCTCAAATCTCCACAGCAGTTGATAGCGATGGGTGGAACATAA | 2841 | 44.35 | MPHRTTYFFPRQFPDRGFDSASTSKQSLDHEKTKLNNSSSSSKETFTSAENDAKPPARDLSVTKTSPVSDRFTGDKAQTNNNNRNKKLPAFYDWFAEKKAASARSRSRSSHVKTWLSNCDEDRELLLPPPPETENEITTVGKDDRNVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTENGNGNFSSDMKDSTVSKNLSLATVRQEEIEGGNEAEEEEEEEKESLAQRVKESYYLQLALARTLSSNVGLAGDSVVMQEGRVEITDTETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDIDEGKRLPPLMSLRAIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSRRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIAKGCKYCVADHRSSCLVKIEDDRQSLREYVVDLVGEPGNLHGPDSSINGGFLSSMPSPLQISHLKEFQEPYVDSSLSRQKIGPRHSCAFPEDLPYSGYRDHQKKGSILHSRAETDNLVDQACNGMRSSQLLLRTKVSEQCMVLQSHILPSADADASKVLDSVAGASMHENKVVIEEIYRKAAIVSEISLNDCTTDEPKLSLSTQSGSKEVGSRSENHSASTIPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNETSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSNTSPLLSSLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT | 946 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4322882 | 4332774 | - | evm.model.ptg000002l.954 | HCH12g0705 | 555552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0705 | 946 | MobiDBLite | consensus disorder prediction | 62 | 85 | - | - | |
HCH12g0705 | 946 | Gene3D | Transferase(Phosphotransferase) domain 1 | 755 | 942 | - | - | |
HCH12g0705 | 946 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 264 | 473 | - | - | |
HCH12g0705 | 946 | MobiDBLite | consensus disorder prediction | 33 | 49 | - | - | |
HCH12g0705 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 791 | 809 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 901 | 923 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 857 | 879 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 750 | 763 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | FunFam | Serine/threonine-protein kinase isoform 1 | 666 | 754 | - | - | |
HCH12g0705 | 946 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 797 | 809 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | MobiDBLite | consensus disorder prediction | 625 | 648 | - | - | |
HCH12g0705 | 946 | FunFam | Serine/threonine-protein kinase CTR1 | 755 | 940 | - | - | |
HCH12g0705 | 946 | ProSiteProfiles | Protein kinase domain profile. | 676 | 934 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
HCH12g0705 | 946 | SMART | serkin_6 | 676 | 934 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | Pfam | Protein tyrosine and serine/threonine kinase | 676 | 930 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0705 | 946 | Gene3D | Phosphorylase Kinase; domain 1 | 669 | 753 | - | - | |
HCH12g0705 | 946 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 86 | 934 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
HCH12g0705 | 946 | SUPERFAMILY | Protein kinase-like (PK-like) | 647 | 929 | IPR011009 | - | |
HCH12g0705 | 946 | ProSitePatterns | Protein kinases ATP-binding region signature. | 682 | 703 | IPR017441 | GO:0005524(InterPro) | |
HCH12g0705 | 946 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
HCH12g0705 | 946 | CDD | STKc_MAP3K-like | 682 | 930 | - | - | |
HCH12g0705 | 946 | Coils | Coil | 206 | 230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0705 | HCH-Chr12:4322882 | HCH3g0203 | HCH-Chr3:1295055 | 1.90E-123 | dispersed | |
HCH7g0856 | HCH-Chr7:24397780 | HCH12g0705 | HCH-Chr12:4322882 | 1.70E-13 | dispersed | |
HCH12g0705 | HCH-Chr12:4322882 | HCH11g0373 | HCH-Chr11:3504491 | 5.20E-174 | transposed | |
HCH12g0705 | HCH-Chr12:4322882 | HCH9g0516 | HCH-Chr9:3311571 | 5.20E-174 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81114 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-64 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0705 | - | - | - | 0.0 |