Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0705 ATGCCGCATAGAACGACTTACTTCTTCCCGAGGCAATTTCCGGATCGTGGATTTGACTCTGCGTCAACTTCCAAGCAGTCTTTAGATCACGAGAAAACCAAACTCAATAACAGCAGCAGCAGCAGCAAAGAAACTTTTACTTCCGCTGAAAACGACGCGAAACCGCCCGCACGTGACTTATCCGTGACCAAAACCTCGCCTGTTTCCGATCGTTTCACGGGCGATAAAGCTCAAACCAATAACAACAATAGGAATAAGAAACTTCCTGCTTTTTACGACTGGTTCGCGGAAAAGAAGGCAGCTTCTGCACGATCACGATCACGATCTTCACACGTGAAAACATGGCTTTCGAATTGCGATGAAGATCGGGAGCTTTTGCTGCCGCCGCCGCCGGAAACTGAGAATGAAATCACGACGGTGGGTAAGGATGATCGGAATGTTGATCGGAACTTTGACCGGCAAGTTTCATTGCCTAGGGTTTCGAGTGGGAGTAGTTATGCGGGGAGTTTGTTTTCGGGGACGGGGACGGAGAATGGGAACGGGAATTTCTCGAGCGATATGAAGGATTCGACGGTGTCGAAGAATTTGTCTTTGGCTACGGTTAGGCAAGAGGAGATAGAAGGTGGAAATGAGGCGGAGGAGGAGGAGGAGGAGGAGAAAGAGAGCTTAGCGCAGAGAGTGAAAGAGAGTTATTATTTGCAACTTGCTTTGGCTAGAACGCTTAGTTCTAATGTTGGTCTTGCTGGAGATTCTGTGGTTATGCAAGAAGGGAGGGTCGAAATTACTGATACTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCTTGTCTTACTCTGACAAAATATCAGATGGGTTCTACAATATATTGGGTATGAATCCATATCTGTGGGTTATGTGCAATGATATCGATGAAGGTAAAAGGCTACCACCACTGATGTCACTTAGAGCCATTGAGCCAAGTGAGACATCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCGAGACTTAAAGAGCTTGAAGACAAAGCACAAGAATTATATTGTGCTTCAGAGAACACCTTAGTTCTGGTGGAGAAACTTGGGAAACTTGTTGCCATCTATATGGGTGGCACTTTCCCGGTGGAGCAAGGAGGGCTGCACTTGCATTGGAAAGTTGTGAGTAGAAGGTTGAGGGAATTTCAGAAATGCATAGTGCTTCCTATTGGTAGTCTGTCTATGGGTCTATGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGAATAGCCAAGGGTTGCAAGTATTGTGTTGCAGATCATCGATCTTCTTGCCTTGTCAAAATTGAAGATGACAGGCAATCCTTGAGGGAATATGTTGTTGATTTAGTTGGGGAACCAGGAAATTTACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCTTTCTTCGATGCCTTCACCACTTCAAATTTCTCATTTGAAAGAGTTTCAAGAACCTTATGTGGACAGTTCTTTAAGTCGTCAAAAGATTGGCCCGAGGCACAGTTGTGCCTTTCCTGAAGATCTTCCATATTCAGGCTATAGAGACCACCAAAAAAAGGGAAGTATTTTACATTCAAGGGCAGAAACTGATAATTTGGTTGATCAAGCTTGTAATGGTATGAGATCATCTCAGCTACTTTTGAGAACAAAAGTGAGTGAACAGTGTATGGTGCTTCAGAGTCATATATTGCCATCTGCTGATGCTGATGCCTCTAAGGTGTTGGATTCTGTCGCTGGTGCTTCTATGCATGAAAACAAAGTTGTCATCGAAGAAATATACCGAAAAGCGGCAATTGTGTCGGAGATTTCACTAAATGATTGTACTACCGATGAACCCAAGCTAAGCTTGTCCACTCAGTCTGGTTCAAAGGAGGTTGGAAGTAGATCTGAAAATCATTCAGCATCAACAATTCCTAAATATTTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGTGCTGGCTCATTTGGTACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAAGATTTCCAAGATGATCAGTTGAAGGAGTTTCTTAGAGAGGTTGCGATAATGAAGCGGGTCCGCCATCCAAATGTGGTTCTGTTCATGGGCGCAGTTACAAAGCGCCCCCATCTGTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTCTATAGGCTAATTCACAGGCCATCTTCTGGTGAACTGATGGATCAAAGAAAGCGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACACTGTCTCAATCCTCCTATAGTACATTGGGATCTTAAATCTCCTAATTTGCTGGTTGACAAGAATTGGACAGTCAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCTGAATTCCTTCGAGGAGAGCCTTCAAATGAGACGTCAGATGTTTACAGTTTCGGCGTGATTCTTTGGGAACTAGTAACCATGCAACAGCCTTGGAGTGGACTTGGCCCTGCTCAGGTTGTGGGAGCTGTCGCCTTCCAAAATAGAAGGCTTTCTATTCCATCAAATACTTCTCCATTGCTGTCTTCCCTAATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCTAGCATAGTTGAGTCGCTGAAGAAATTGCTCAAATCTCCACAGCAGTTGATAGCGATGGGTGGAACATAA 2841 44.35 MPHRTTYFFPRQFPDRGFDSASTSKQSLDHEKTKLNNSSSSSKETFTSAENDAKPPARDLSVTKTSPVSDRFTGDKAQTNNNNRNKKLPAFYDWFAEKKAASARSRSRSSHVKTWLSNCDEDRELLLPPPPETENEITTVGKDDRNVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTENGNGNFSSDMKDSTVSKNLSLATVRQEEIEGGNEAEEEEEEEKESLAQRVKESYYLQLALARTLSSNVGLAGDSVVMQEGRVEITDTETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDIDEGKRLPPLMSLRAIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSRRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIAKGCKYCVADHRSSCLVKIEDDRQSLREYVVDLVGEPGNLHGPDSSINGGFLSSMPSPLQISHLKEFQEPYVDSSLSRQKIGPRHSCAFPEDLPYSGYRDHQKKGSILHSRAETDNLVDQACNGMRSSQLLLRTKVSEQCMVLQSHILPSADADASKVLDSVAGASMHENKVVIEEIYRKAAIVSEISLNDCTTDEPKLSLSTQSGSKEVGSRSENHSASTIPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNETSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSNTSPLLSSLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4322882 4332774 - evm.model.ptg000002l.954 HCH12g0705 555552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0705 946 MobiDBLite consensus disorder prediction 62 85 - -
HCH12g0705 946 Gene3D Transferase(Phosphotransferase) domain 1 755 942 - -
HCH12g0705 946 Pfam Ethylene-responsive protein kinase Le-CTR1 264 473 - -
HCH12g0705 946 MobiDBLite consensus disorder prediction 33 49 - -
HCH12g0705 946 PRINTS Tyrosine kinase catalytic domain signature 791 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 PRINTS Tyrosine kinase catalytic domain signature 857 879 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 PRINTS Tyrosine kinase catalytic domain signature 750 763 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 FunFam Serine/threonine-protein kinase isoform 1 666 754 - -
HCH12g0705 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 MobiDBLite consensus disorder prediction 625 648 - -
HCH12g0705 946 FunFam Serine/threonine-protein kinase CTR1 755 940 - -
HCH12g0705 946 ProSiteProfiles Protein kinase domain profile. 676 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 MobiDBLite consensus disorder prediction 202 223 - -
HCH12g0705 946 SMART serkin_6 676 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 Pfam Protein tyrosine and serine/threonine kinase 676 930 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0705 946 Gene3D Phosphorylase Kinase; domain 1 669 753 - -
HCH12g0705 946 PANTHER SERINE-THREONINE PROTEIN KINASE 86 934 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH12g0705 946 SUPERFAMILY Protein kinase-like (PK-like) 647 929 IPR011009 -
HCH12g0705 946 ProSitePatterns Protein kinases ATP-binding region signature. 682 703 IPR017441 GO:0005524(InterPro)
HCH12g0705 946 MobiDBLite consensus disorder prediction 1 85 - -
HCH12g0705 946 CDD STKc_MAP3K-like 682 930 - -
HCH12g0705 946 Coils Coil 206 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0705 HCH-Chr12:4322882 HCH3g0203 HCH-Chr3:1295055 1.90E-123 dispersed
HCH7g0856 HCH-Chr7:24397780 HCH12g0705 HCH-Chr12:4322882 1.70E-13 dispersed
HCH12g0705 HCH-Chr12:4322882 HCH11g0373 HCH-Chr11:3504491 5.20E-174 transposed
HCH12g0705 HCH-Chr12:4322882 HCH9g0516 HCH-Chr9:3311571 5.20E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81114 PF07714 PK_Tyr_Ser-Thr 1.50E-64 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0705 - - - 0.0