Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0709 ATGAAAAACAACACATTTTTTTCGGCTCTCAGATTATTATTTTTTCTCTCCTACTCTTTTTATTTTTCCGTAACACGATCACTATCACCACCACCGTCACCATCACCGCCGAGGTCGTTCAATTTCCACCACATTGCCGTCGAACATGGAGGTGATGTATCCTTGCCGCCGCCGCTACAACTGCGTATTCACGATCAGCACGTTGTTATGGAGAATGGCATTGTGGAGGTGACATTATCAAATCCACAAGGAATCGTCACCGGAATAGGATACAATGGTATTGATAATTTGCTTGAAGTTAGCAACAAAGAAGATGATAGAGGATATTGGGACCTTGTTTGGAATTTAGCTGGAAGTTCTGGAACCAAGGGTATTTTTGATCGAATAGAGGGAACGAATATGAAGGTAATTGTGGAAAATGATGAACAAATAGAACTCTCATTCACCAGACTTTACAATTCTTCCACCGGAAGCAATTTCGTTCCCTTAAATATCGATAAAAGGTTTGTAATGCTTCGTGGTTCGTCAGGATTTTATTCGTATGCCATTTATGAACATTTGAGAGAATGGCCTCCCTTTATCATTGATAATACCAGGATCGTATTCAAGCTCAGAAAAGACAGGTTTCACTACATGGTAGTAGCAGACGAGAGACAGAGATTCATGCCTTCACCCGACGACAGGAAGCCACCCAGAGGCCAAGCTCTGGACTATCCAGAGGCCGTTCTCCTTCTGGATCCCCTCGAGCCAGAGTTCAAGGGAGAGGTGGACGACAAATACCAATACGGCTGTGAAAGCGAAAACTCCCGGGTTCACGGGTGGATATCTGCCGACCCGCCCACCGGGCTCTGGCAAATTGCACCGACCCAGGAGTTCCGCTCCGGTGGGCCCCTCAAACAAATCCTGACTTCTCACGTGGGCCCCATCACCCTTTCAGTATTTCATAGCGCTCATTATGCAGGAGAGGATATGGTAATGAAATTTGAAACCAATGAACCATGGAAGAAAGTTTATGGACCTATCTTTATTTATCTCAATTCTTTGCTTATCGGAGAAAATCCCCTTAAACTTTGGGAAAACGCCAAACAACAGATGATGGCTGAAGTTGAGAGCTGGCCTTATAATTTTCCTGCTTCGGAGGATTTTTTCAAATTGGATGAACGAGGCACTGTCAGTGGCAGGCTGATGGTAACGGAGAGATTTGTGAGTGATGAATCCGTGCCTGCAAGTGATGCTTATGTTGGATTGGCAGTTCCGGGAGGACTTGGCTCCTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATAAGGATGGGTTTTTCTCTTTGACAAATATTTGTAGTGGCAATTATAGCCTTTATGGATGGGTACCTACATATATTGGCGATTATCAATATCATGTTCTCATTACTATAACCCCAGGTAGTGATATCAACGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGACGGTCCTACATTGTGGGAAATAGGCATTCCCGATCGTACTGCTGCGGAATTCTTTGTCCCTGATCCTGATCCAAAGTATATCAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGGTATGCAGATTTGTATCCTAACGAGGATCTAGTTTATACAGTTGGCCTTAGCGACTACAGAAAAGATTGGTTCTTCGCACAAGTTACCAGGAAGGTACAGGATAAGAATTATGAAGGAACTACTTGGCAAATTAAGTTTGGACTTGACAATGTAGATAGACTTGGAACCTATAGGTTGCGCCTTGCACTAGCAACTGCACATGCTGCAGAATTACAAGTTCGACTAAATGATGCACAAACAATTCCTCCATTATTTACAACCGGATTGATCGGGAAGGACAACACTATAGCTAGGCATGGAATCCACGGTCTCTATCGGCTGTACACTGTTGACATTCTGGGCAGGGAACTTATGGTGGTGATGGATAATGGCATATTGCAAGTGACACTGTCGAAGCCACATGGAAATGTTACTGGAATACAATACAATGGCGTTGACAATGTTTTAGAAATTGATGATAAGGAATCTCATAGAGGGTACTGGGACCTTGTGTGGAGTAGCTCAGGGAGTACCGGCACAACAGGAACCTTTGACGAGATGAAAGGAAAAACATTTGAAGTGATAGTGCAAAATGAGGAACAGATAGAGATCTCGTTTAAAAGAGATTATTCATTCAAGGACAAAGCAGTTCCCTTAAACATAGATAAAAGGTTCATCATGCTTCGTAATTCCTCTGGATTCTACTCCTATGCCATCTTTGAGCACTTGAAGGAATGGCCTCCGTTCAACCTTCCTCAAACCAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTACATGGCAATAGCAGATAACAGAAAGAGATTCATGCCACTTCCTGAAGACAGACTGCGTCACAGAGGCAAACCCTTGGACTATCCAGAGGCTGTATTGCTAGTCAATCCGATAGAGGCTGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAATAAAGATCTTCACGTGCACGGATGGATATCAATGAATCCTCAGGTGGGGTTTTGGCAAATCACTCCCAGCAATGAGTTCAGATCAGGCGGACCCCTTAAACAAAACCTTACATCTCATGTGGGACCATATGCTCTTGCTATGTTTCTCAGTGCTCATTATTCGGGGGAGGACTTGGTGTTGAAGCTCAATCCCGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTCTTTCTCTATCTTAATTCTGTTCCTGATGGAGATGACCCATTTTCTTTGTGGGAAGATGCTAATGATCAGATGAAGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAAGATTTCCTCCCGCCAAACCAACGGGGTAGACTCACGGGCAAATTACTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCAGCGACTGATGCGTATGTGGGACTGGCACCACCAGGAGATGTAGGATCATGGCAGACAGAAAATAAGGGTTACCAGTTTTGGACCAAAACAGAAGTTGATGGATCGTTTAGCATCGAAAATATACGCATTGGCAACTACAATCTTTATGCTTGGGTTCCTGGTTTCATTGGTGATTTTCGATATGATGTCGTTATCAGCATCTCCGCAGGTAGTGATATGGATGCGGGTGTTCTTGTATACGAGCCACCTAGAAATGGACCCACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCTAATCCAAAGTACATTAACAAATTGTATGTCGATCATCCTGATAGATTTAGGCAATATGGATTATGGGAGAGATATGGAGACTTATATCCTGATGGCGATTTGGTATATACAGTTGGTGTCAGTGACTACAAAAAGGATTGGTTTTTTGCTCAGGTTACAAGAAAGAAAGATGATGGATCATATCAAGGAACTACCTGGCAAATCAAGTTTATACTCGAAAATGATATCGATAAGAATGGCGTCTATAAGCTGCTAGTCGCTCTTGCTACTGCCAATGTAGCTGAATTACAGATTCACATAAACAATCCAGAAGAAGGAGCTGCAGTATTTTCAACGGGACAGATTGGGCACGACAACGCGATCGCTAGACATGGGATTCATGGTCTCTATAGACTCTACACTGTGGATATATCAGGATCTGTGCTTGTGGAAGGAGAAAACACCATTTTCCTTTCTCAAATTATAGGCACTTCCCCCTTCAATGGACTCATGTATGATTATATCCGCCTTGAAGGTCCCTCGGCCACCTCCGATGCTTCTGAAACTGAATAA 3861 43.15 MKNNTFFSALRLLFFLSYSFYFSVTRSLSPPPSPSPPRSFNFHHIAVEHGGDVSLPPPLQLRIHDQHVVMENGIVEVTLSNPQGIVTGIGYNGIDNLLEVSNKEDDRGYWDLVWNLAGSSGTKGIFDRIEGTNMKVIVENDEQIELSFTRLYNSSTGSNFVPLNIDKRFVMLRGSSGFYSYAIYEHLREWPPFIIDNTRIVFKLRKDRFHYMVVADERQRFMPSPDDRKPPRGQALDYPEAVLLLDPLEPEFKGEVDDKYQYGCESENSRVHGWISADPPTGLWQIAPTQEFRSGGPLKQILTSHVGPITLSVFHSAHYAGEDMVMKFETNEPWKKVYGPIFIYLNSLLIGENPLKLWENAKQQMMAEVESWPYNFPASEDFFKLDERGTVSGRLMVTERFVSDESVPASDAYVGLAVPGGLGSWQTESKGYQFWTRADKDGFFSLTNICSGNYSLYGWVPTYIGDYQYHVLITITPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFFVPDPDPKYINKLYVNHSDRFRQYGLWERYADLYPNEDLVYTVGLSDYRKDWFFAQVTRKVQDKNYEGTTWQIKFGLDNVDRLGTYRLRLALATAHAAELQVRLNDAQTIPPLFTTGLIGKDNTIARHGIHGLYRLYTVDILGRELMVVMDNGILQVTLSKPHGNVTGIQYNGVDNVLEIDDKESHRGYWDLVWSSSGSTGTTGTFDEMKGKTFEVIVQNEEQIEISFKRDYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIFEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRFMPLPEDRLRHRGKPLDYPEAVLLVNPIEAEFKGEVDDKYQYSCENKDLHVHGWISMNPQVGFWQITPSNEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLNPDEPWKKVFGPVFLYLNSVPDGDDPFSLWEDANDQMKKEVQSWPYSFPASEDFLPPNQRGRLTGKLLVLDRYVNQEQMPATDAYVGLAPPGDVGSWQTENKGYQFWTKTEVDGSFSIENIRIGNYNLYAWVPGFIGDFRYDVVISISAGSDMDAGVLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDRFRQYGLWERYGDLYPDGDLVYTVGVSDYKKDWFFAQVTRKKDDGSYQGTTWQIKFILENDIDKNGVYKLLVALATANVAELQIHINNPEEGAAVFSTGQIGHDNAIARHGIHGLYRLYTVDISGSVLVEGENTIFLSQIIGTSPFNGLMYDYIRLEGPSATSDASETE 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4407137 4420273 - evm.model.ptg000002l.950 HCH12g0709 555556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0709 1286 CDD RGL4_N 658 945 - -
HCH12g0709 1286 Gene3D - 1082 1274 - -
HCH12g0709 1286 Gene3D - 494 677 - -
HCH12g0709 1286 SUPERFAMILY Galactose mutarotase-like 661 935 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH12g0709 1286 SUPERFAMILY Starch-binding domain-like 384 484 IPR013784 GO:0030246(InterPro)
HCH12g0709 1286 Gene3D - 972 1071 - -
HCH12g0709 1286 Gene3D - 385 484 - -
HCH12g0709 1286 FunFam Rhamnogalacturonate lyase B 972 1071 - -
HCH12g0709 1286 SUPERFAMILY Starch-binding domain-like 972 1066 IPR013784 GO:0030246(InterPro)
HCH12g0709 1286 Pfam Polysaccharide lyase family 4, domain III 1084 1273 IPR029411 -
HCH12g0709 1286 Pfam Polysaccharide lyase family 4, domain III 496 664 IPR029411 -
HCH12g0709 1286 CDD RGL4_C 498 681 - -
HCH12g0709 1286 CDD RGL4_M 975 1074 IPR029413 -
HCH12g0709 1286 FunFam Rhamnogalacturonate lyase B 384 483 - -
HCH12g0709 1286 CDD RGL4_C 1086 1274 - -
HCH12g0709 1286 Pfam Rhamnogalacturonate lyase family 60 256 IPR010325 -
HCH12g0709 1286 Pfam Rhamnogalacturonate lyase family 655 844 IPR010325 -
HCH12g0709 1286 Pfam Polysaccharide lyase family 4, domain II 999 1069 IPR029413 -
HCH12g0709 1286 Pfam Polysaccharide lyase family 4, domain II 411 482 IPR029413 -
HCH12g0709 1286 SUPERFAMILY Galactose-binding domain-like 1081 1274 IPR008979 -
HCH12g0709 1286 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 657 1277 IPR051850 -
HCH12g0709 1286 SUPERFAMILY Galactose-binding domain-like 493 658 IPR008979 -
HCH12g0709 1286 CDD RGL4_M 387 486 IPR029413 -
HCH12g0709 1286 CDD RGL4_N 61 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0709 HCH-Chr12:4407137 HCH14g0806 HCH-Chr14:36044308 2.50E-195 dispersed
HCH12g0709 HCH-Chr12:4407137 HCH12g0710 HCH-Chr12:4422117 1.00E-260 tandem
HCH12g0709 HCH-Chr12:4407137 HCH14g0431 HCH-Chr14:33339770 1.60E-213 wgd
HCH12g0709 HCH-Chr12:4407137 HCH4g0262 HCH-Chr4:1643091 6.10E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0709 K18195 - mdm:103431713 1174.46