Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0709 | ATGAAAAACAACACATTTTTTTCGGCTCTCAGATTATTATTTTTTCTCTCCTACTCTTTTTATTTTTCCGTAACACGATCACTATCACCACCACCGTCACCATCACCGCCGAGGTCGTTCAATTTCCACCACATTGCCGTCGAACATGGAGGTGATGTATCCTTGCCGCCGCCGCTACAACTGCGTATTCACGATCAGCACGTTGTTATGGAGAATGGCATTGTGGAGGTGACATTATCAAATCCACAAGGAATCGTCACCGGAATAGGATACAATGGTATTGATAATTTGCTTGAAGTTAGCAACAAAGAAGATGATAGAGGATATTGGGACCTTGTTTGGAATTTAGCTGGAAGTTCTGGAACCAAGGGTATTTTTGATCGAATAGAGGGAACGAATATGAAGGTAATTGTGGAAAATGATGAACAAATAGAACTCTCATTCACCAGACTTTACAATTCTTCCACCGGAAGCAATTTCGTTCCCTTAAATATCGATAAAAGGTTTGTAATGCTTCGTGGTTCGTCAGGATTTTATTCGTATGCCATTTATGAACATTTGAGAGAATGGCCTCCCTTTATCATTGATAATACCAGGATCGTATTCAAGCTCAGAAAAGACAGGTTTCACTACATGGTAGTAGCAGACGAGAGACAGAGATTCATGCCTTCACCCGACGACAGGAAGCCACCCAGAGGCCAAGCTCTGGACTATCCAGAGGCCGTTCTCCTTCTGGATCCCCTCGAGCCAGAGTTCAAGGGAGAGGTGGACGACAAATACCAATACGGCTGTGAAAGCGAAAACTCCCGGGTTCACGGGTGGATATCTGCCGACCCGCCCACCGGGCTCTGGCAAATTGCACCGACCCAGGAGTTCCGCTCCGGTGGGCCCCTCAAACAAATCCTGACTTCTCACGTGGGCCCCATCACCCTTTCAGTATTTCATAGCGCTCATTATGCAGGAGAGGATATGGTAATGAAATTTGAAACCAATGAACCATGGAAGAAAGTTTATGGACCTATCTTTATTTATCTCAATTCTTTGCTTATCGGAGAAAATCCCCTTAAACTTTGGGAAAACGCCAAACAACAGATGATGGCTGAAGTTGAGAGCTGGCCTTATAATTTTCCTGCTTCGGAGGATTTTTTCAAATTGGATGAACGAGGCACTGTCAGTGGCAGGCTGATGGTAACGGAGAGATTTGTGAGTGATGAATCCGTGCCTGCAAGTGATGCTTATGTTGGATTGGCAGTTCCGGGAGGACTTGGCTCCTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATAAGGATGGGTTTTTCTCTTTGACAAATATTTGTAGTGGCAATTATAGCCTTTATGGATGGGTACCTACATATATTGGCGATTATCAATATCATGTTCTCATTACTATAACCCCAGGTAGTGATATCAACGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGACGGTCCTACATTGTGGGAAATAGGCATTCCCGATCGTACTGCTGCGGAATTCTTTGTCCCTGATCCTGATCCAAAGTATATCAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGGTATGCAGATTTGTATCCTAACGAGGATCTAGTTTATACAGTTGGCCTTAGCGACTACAGAAAAGATTGGTTCTTCGCACAAGTTACCAGGAAGGTACAGGATAAGAATTATGAAGGAACTACTTGGCAAATTAAGTTTGGACTTGACAATGTAGATAGACTTGGAACCTATAGGTTGCGCCTTGCACTAGCAACTGCACATGCTGCAGAATTACAAGTTCGACTAAATGATGCACAAACAATTCCTCCATTATTTACAACCGGATTGATCGGGAAGGACAACACTATAGCTAGGCATGGAATCCACGGTCTCTATCGGCTGTACACTGTTGACATTCTGGGCAGGGAACTTATGGTGGTGATGGATAATGGCATATTGCAAGTGACACTGTCGAAGCCACATGGAAATGTTACTGGAATACAATACAATGGCGTTGACAATGTTTTAGAAATTGATGATAAGGAATCTCATAGAGGGTACTGGGACCTTGTGTGGAGTAGCTCAGGGAGTACCGGCACAACAGGAACCTTTGACGAGATGAAAGGAAAAACATTTGAAGTGATAGTGCAAAATGAGGAACAGATAGAGATCTCGTTTAAAAGAGATTATTCATTCAAGGACAAAGCAGTTCCCTTAAACATAGATAAAAGGTTCATCATGCTTCGTAATTCCTCTGGATTCTACTCCTATGCCATCTTTGAGCACTTGAAGGAATGGCCTCCGTTCAACCTTCCTCAAACCAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTACATGGCAATAGCAGATAACAGAAAGAGATTCATGCCACTTCCTGAAGACAGACTGCGTCACAGAGGCAAACCCTTGGACTATCCAGAGGCTGTATTGCTAGTCAATCCGATAGAGGCTGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAATAAAGATCTTCACGTGCACGGATGGATATCAATGAATCCTCAGGTGGGGTTTTGGCAAATCACTCCCAGCAATGAGTTCAGATCAGGCGGACCCCTTAAACAAAACCTTACATCTCATGTGGGACCATATGCTCTTGCTATGTTTCTCAGTGCTCATTATTCGGGGGAGGACTTGGTGTTGAAGCTCAATCCCGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTCTTTCTCTATCTTAATTCTGTTCCTGATGGAGATGACCCATTTTCTTTGTGGGAAGATGCTAATGATCAGATGAAGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAAGATTTCCTCCCGCCAAACCAACGGGGTAGACTCACGGGCAAATTACTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCAGCGACTGATGCGTATGTGGGACTGGCACCACCAGGAGATGTAGGATCATGGCAGACAGAAAATAAGGGTTACCAGTTTTGGACCAAAACAGAAGTTGATGGATCGTTTAGCATCGAAAATATACGCATTGGCAACTACAATCTTTATGCTTGGGTTCCTGGTTTCATTGGTGATTTTCGATATGATGTCGTTATCAGCATCTCCGCAGGTAGTGATATGGATGCGGGTGTTCTTGTATACGAGCCACCTAGAAATGGACCCACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCTAATCCAAAGTACATTAACAAATTGTATGTCGATCATCCTGATAGATTTAGGCAATATGGATTATGGGAGAGATATGGAGACTTATATCCTGATGGCGATTTGGTATATACAGTTGGTGTCAGTGACTACAAAAAGGATTGGTTTTTTGCTCAGGTTACAAGAAAGAAAGATGATGGATCATATCAAGGAACTACCTGGCAAATCAAGTTTATACTCGAAAATGATATCGATAAGAATGGCGTCTATAAGCTGCTAGTCGCTCTTGCTACTGCCAATGTAGCTGAATTACAGATTCACATAAACAATCCAGAAGAAGGAGCTGCAGTATTTTCAACGGGACAGATTGGGCACGACAACGCGATCGCTAGACATGGGATTCATGGTCTCTATAGACTCTACACTGTGGATATATCAGGATCTGTGCTTGTGGAAGGAGAAAACACCATTTTCCTTTCTCAAATTATAGGCACTTCCCCCTTCAATGGACTCATGTATGATTATATCCGCCTTGAAGGTCCCTCGGCCACCTCCGATGCTTCTGAAACTGAATAA | 3861 | 43.15 | MKNNTFFSALRLLFFLSYSFYFSVTRSLSPPPSPSPPRSFNFHHIAVEHGGDVSLPPPLQLRIHDQHVVMENGIVEVTLSNPQGIVTGIGYNGIDNLLEVSNKEDDRGYWDLVWNLAGSSGTKGIFDRIEGTNMKVIVENDEQIELSFTRLYNSSTGSNFVPLNIDKRFVMLRGSSGFYSYAIYEHLREWPPFIIDNTRIVFKLRKDRFHYMVVADERQRFMPSPDDRKPPRGQALDYPEAVLLLDPLEPEFKGEVDDKYQYGCESENSRVHGWISADPPTGLWQIAPTQEFRSGGPLKQILTSHVGPITLSVFHSAHYAGEDMVMKFETNEPWKKVYGPIFIYLNSLLIGENPLKLWENAKQQMMAEVESWPYNFPASEDFFKLDERGTVSGRLMVTERFVSDESVPASDAYVGLAVPGGLGSWQTESKGYQFWTRADKDGFFSLTNICSGNYSLYGWVPTYIGDYQYHVLITITPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFFVPDPDPKYINKLYVNHSDRFRQYGLWERYADLYPNEDLVYTVGLSDYRKDWFFAQVTRKVQDKNYEGTTWQIKFGLDNVDRLGTYRLRLALATAHAAELQVRLNDAQTIPPLFTTGLIGKDNTIARHGIHGLYRLYTVDILGRELMVVMDNGILQVTLSKPHGNVTGIQYNGVDNVLEIDDKESHRGYWDLVWSSSGSTGTTGTFDEMKGKTFEVIVQNEEQIEISFKRDYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIFEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRFMPLPEDRLRHRGKPLDYPEAVLLVNPIEAEFKGEVDDKYQYSCENKDLHVHGWISMNPQVGFWQITPSNEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKLNPDEPWKKVFGPVFLYLNSVPDGDDPFSLWEDANDQMKKEVQSWPYSFPASEDFLPPNQRGRLTGKLLVLDRYVNQEQMPATDAYVGLAPPGDVGSWQTENKGYQFWTKTEVDGSFSIENIRIGNYNLYAWVPGFIGDFRYDVVISISAGSDMDAGVLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDRFRQYGLWERYGDLYPDGDLVYTVGVSDYKKDWFFAQVTRKKDDGSYQGTTWQIKFILENDIDKNGVYKLLVALATANVAELQIHINNPEEGAAVFSTGQIGHDNAIARHGIHGLYRLYTVDISGSVLVEGENTIFLSQIIGTSPFNGLMYDYIRLEGPSATSDASETE | 1286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4407137 | 4420273 | - | evm.model.ptg000002l.950 | HCH12g0709 | 555556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0709 | 1286 | CDD | RGL4_N | 658 | 945 | - | - | |
HCH12g0709 | 1286 | Gene3D | - | 1082 | 1274 | - | - | |
HCH12g0709 | 1286 | Gene3D | - | 494 | 677 | - | - | |
HCH12g0709 | 1286 | SUPERFAMILY | Galactose mutarotase-like | 661 | 935 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
HCH12g0709 | 1286 | SUPERFAMILY | Starch-binding domain-like | 384 | 484 | IPR013784 | GO:0030246(InterPro) | |
HCH12g0709 | 1286 | Gene3D | - | 972 | 1071 | - | - | |
HCH12g0709 | 1286 | Gene3D | - | 385 | 484 | - | - | |
HCH12g0709 | 1286 | FunFam | Rhamnogalacturonate lyase B | 972 | 1071 | - | - | |
HCH12g0709 | 1286 | SUPERFAMILY | Starch-binding domain-like | 972 | 1066 | IPR013784 | GO:0030246(InterPro) | |
HCH12g0709 | 1286 | Pfam | Polysaccharide lyase family 4, domain III | 1084 | 1273 | IPR029411 | - | |
HCH12g0709 | 1286 | Pfam | Polysaccharide lyase family 4, domain III | 496 | 664 | IPR029411 | - | |
HCH12g0709 | 1286 | CDD | RGL4_C | 498 | 681 | - | - | |
HCH12g0709 | 1286 | CDD | RGL4_M | 975 | 1074 | IPR029413 | - | |
HCH12g0709 | 1286 | FunFam | Rhamnogalacturonate lyase B | 384 | 483 | - | - | |
HCH12g0709 | 1286 | CDD | RGL4_C | 1086 | 1274 | - | - | |
HCH12g0709 | 1286 | Pfam | Rhamnogalacturonate lyase family | 60 | 256 | IPR010325 | - | |
HCH12g0709 | 1286 | Pfam | Rhamnogalacturonate lyase family | 655 | 844 | IPR010325 | - | |
HCH12g0709 | 1286 | Pfam | Polysaccharide lyase family 4, domain II | 999 | 1069 | IPR029413 | - | |
HCH12g0709 | 1286 | Pfam | Polysaccharide lyase family 4, domain II | 411 | 482 | IPR029413 | - | |
HCH12g0709 | 1286 | SUPERFAMILY | Galactose-binding domain-like | 1081 | 1274 | IPR008979 | - | |
HCH12g0709 | 1286 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 657 | 1277 | IPR051850 | - | |
HCH12g0709 | 1286 | SUPERFAMILY | Galactose-binding domain-like | 493 | 658 | IPR008979 | - | |
HCH12g0709 | 1286 | CDD | RGL4_M | 387 | 486 | IPR029413 | - | |
HCH12g0709 | 1286 | CDD | RGL4_N | 61 | 347 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0709 | HCH-Chr12:4407137 | HCH14g0806 | HCH-Chr14:36044308 | 2.50E-195 | dispersed | |
HCH12g0709 | HCH-Chr12:4407137 | HCH12g0710 | HCH-Chr12:4422117 | 1.00E-260 | tandem | |
HCH12g0709 | HCH-Chr12:4407137 | HCH14g0431 | HCH-Chr14:33339770 | 1.60E-213 | wgd | |
HCH12g0709 | HCH-Chr12:4407137 | HCH4g0262 | HCH-Chr4:1643091 | 6.10E-258 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0709 | K18195 | - | mdm:103431713 | 1174.46 |