Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0710 ATGTCATCCAGGGGAGTGCGATTGCACATACAAAGTCATCATGTGGTGGTGGATAATGGGATACTGCAACTAACTTTATCGAATCCTGATGGAATTATCACTGGCATTCGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACAATGAATCCAACAGAGGGTACTGGGATCTTGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAGAGGAACGAGTTTCAGGGTTATTGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTATGAGGATGTGGGATCCATCCCTTGAGGGAAAATTTGTTCCTTTGAATATAGACAAAAGGTTCATTATGCTACGTGGTTGCTCTGGATTCTACTCTTATGCAATTTACGAGCATTTAAAGGATTGGCCTGATTTTGATCTTGGTGAAACCAGGATCACATTCAAACTTAGGAAAGACAAGTTCCAATACATGGCTGTAGCTGATAACAGGCAGAGATTCATGCCTTTGCCTGATGATCGATTATCTGGAAGATGCCAAACCTTGGCTTATCCCGAAGCCGTCTTGCTCACGAATCCCAAGAACCCAGCACTGATGGGTGAGGTGGATGACAAATACCTATACTCATGTGAAAATAAAGATTTAAAGGTCCATGGATGGATATGCAACAATCCACCCACAGGGTTTTGGCAGATTACACCTAGTGATGAATTTCGATCGGGAGGCCCCCTTAAGCAAAGTCTAACATCGCACGTGGGGCCGACAACCCTTGCTATGTTTCTTAGTGCTCATTATGCGGGACAAGATTTAGTGCCAAAAATTAGAGCTGGTGAGCCATGGAAAAAGGTTTTTGGTCCTGTTTTTCTCTATCTTAATTCCACCTCAGTTGGAGATGACTCATTTTGGCTATGGGAGGATGCTAAAATACAGATGATGAGAGAAGTCCAAAGTTGGCCATATAGTTTCCCTGCATCTGAAGATTTCCCAAAAGTAGATCAACGGGGTACCGTTACGGGTAGGCTACTGGTCTTGGATAGGTATGTAAGTGGAGACTATATGCCTGCAAATGAAGCCTTTGTAGGATTGGCTGCGCCAGGAGAAGTAGGGTCATGGCAGAGAGAATGTAAGGGATATCAATTCTGGACTAGAGCAGATGAGGCTGGTTATTTCACCATCAACCACATACACACTGGTGACTATAATCTATATGCATGGGTCCCTGGTTTTATTGGAGATTATCGTTGTGATGCCCTCATCAATATAAACCAAGGATCTTGCATTGACATGGGCGATCTTGTCTATGAGCCTCCAAGAGATGGGCCTACACTTTGGGAAATAGGCATTCCTGATCGCTCTGCATCGGAGTTCCACGTTCCCGATCCTAATCCATTACATATGAATAAGCTCTTTGTCAACCATCCTGACAGGTTTCGGCAATACGGGTTATGGGACAGATACGCTGAAATATACTCTGAGGAGGATTTAGTTTACACAATTGGCACGAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGACAGACGGTAATGCACATCAAGGAACTACTTGGCAAATCAAGTTTAAACTTGATAGAGTGGATCACAAGAATATGTATGCACTGCGAATTGCGATCGCTTCTGCAACTCTTGCTGAATTGCAGGTTCGGGTTAACGACCCAAGAGGCAAACGACCTTTATTTACTAGTGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGACTTTATTGGCTTTACAATGTGGCTATACAAGGCTCTTATCTGGTTGAAGGAGATAACACAATCTTCTTGACCCAACCACGATGCACCAGCCCTTTCCAAGGGATCATGTATGACTACATCCGTCTCGAAGGACCCCCAATATAA 1902 43.17 MSSRGVRLHIQSHHVVVDNGILQLTLSNPDGIITGIRYNGVDNLLEVLNNESNRGYWDLVWNSPGSKGIFDVIRGTSFRVIVENEEQVELSFMRMWDPSLEGKFVPLNIDKRFIMLRGCSGFYSYAIYEHLKDWPDFDLGETRITFKLRKDKFQYMAVADNRQRFMPLPDDRLSGRCQTLAYPEAVLLTNPKNPALMGEVDDKYLYSCENKDLKVHGWICNNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAMFLSAHYAGQDLVPKIRAGEPWKKVFGPVFLYLNSTSVGDDSFWLWEDAKIQMMREVQSWPYSFPASEDFPKVDQRGTVTGRLLVLDRYVSGDYMPANEAFVGLAAPGEVGSWQRECKGYQFWTRADEAGYFTINHIHTGDYNLYAWVPGFIGDYRCDALININQGSCIDMGDLVYEPPRDGPTLWEIGIPDRSASEFHVPDPNPLHMNKLFVNHPDRFRQYGLWDRYAEIYSEEDLVYTIGTSDYSKDWFFAQVPRKTDGNAHQGTTWQIKFKLDRVDHKNMYALRIAIASATLAELQVRVNDPRGKRPLFTSGLIGRDNSIARHGIHGLYWLYNVAIQGSYLVEGDNTIFLTQPRCTSPFQGIMYDYIRLEGPPI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4422117 4426703 - evm.model.ptg000002l.949 HCH12g0710 555557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0710 633 Gene3D - 329 414 - -
HCH12g0710 633 Gene3D - 7 307 IPR014718 GO:0030246(InterPro)
HCH12g0710 633 CDD RGL4_N 6 293 - -
HCH12g0710 633 CDD RGL4_C 442 629 - -
HCH12g0710 633 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
HCH12g0710 633 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
HCH12g0710 633 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
HCH12g0710 633 Gene3D - 438 629 - -
HCH12g0710 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 IPR051850 -
HCH12g0710 633 SUPERFAMILY Starch-binding domain-like 329 421 IPR013784 GO:0030246(InterPro)
HCH12g0710 633 CDD RGL4_M 331 430 IPR029413 -
HCH12g0710 633 Pfam Rhamnogalacturonate lyase family 5 200 IPR010325 -
HCH12g0710 633 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH12g0710 633 FunFam Rhamnogalacturonate lyase B 328 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0750 HCH-Chr11:36621399 HCH12g0710 HCH-Chr12:4422117 3.60E-233 dispersed
HCH12g0710 HCH-Chr12:4422117 HCH4g0262 HCH-Chr4:1643091 1.80E-287 dispersed
HCH12g0709 HCH-Chr12:4407137 HCH12g0710 HCH-Chr12:4422117 1.00E-260 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0710 K18195 - csv:101203947 1199.5