Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0712 ATGGGGAGAGGCAAGATTGCGATAAGGAGAATTGATAATTCGACGAGTAGACAAGTAACTTTCTCGAAGCGTAGGAATGGATTGTTGAAGAAGGCAAGAGAGCTCGCGATCCTGTGTGACGCGGATGTAGGAGTTATCATCTTCTCCAGCACTAGCAAGCTCTATGAATACTCCAGCTCCAGCATGAAACCAATAATTGAACGATACAACAAAACAAAAGAGGAGCATCATCAACTAAGGAACTCAATCTCTGAAATCAAGTATTGGCAAAGGGAGGCCGCGATGTTACAGCAGCAACTGCACAGCTTACAAGAAAATCACAGGCAAATGATGGGTGAAGAGCTTACTGGTCTGGGTGTTAAAGATCTACAGAATCTAGAGAATCAACTGGAAATGAGTCTCCGTGGTGTCCGTACGAAGAAGGATCAAATCTTAATGGATGAAATACAAGAGCTAAACAGAAAGGCGGGCCTTATTCAGCAAGACAATATGGGACTTTATAAGAAGGTAAACCTAATTCATCGAGAAAACACGGAATTATATAAGAAGGTCCATGGAACAAAGGATGCCAATGGAGCCCATTTAAGTACTCTAACCAACAGACTTGGTGTTGGAGAGGGCACAATCATACCTATTAACCTTCAACTCAGCCAGCCAGAGCCACGAGACTGTGAAGCAATAGAAAGAGCTACAAAGCTAGGACTACAACTACGCTAG 717 43.1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELAILCDADVGVIIFSSTSKLYEYSSSSMKPIIERYNKTKEEHHQLRNSISEIKYWQREAAMLQQQLHSLQENHRQMMGEELTGLGVKDLQNLENQLEMSLRGVRTKKDQILMDEIQELNRKAGLIQQDNMGLYKKVNLIHRENTELYKKVHGTKDANGAHLSTLTNRLGVGEGTIIPINLQLSQPEPRDCEAIERATKLGLQLR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4438182 4448245 + evm.model.ptg000002l.947 HCH12g0712 555559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0712 238 Gene3D - 13 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 Coils Coil 86 113 - -
HCH12g0712 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g0712 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 Pfam K-box region 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g0712 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
HCH12g0712 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g0712 238 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH12g0712 238 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0712 238 Coils Coil 123 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0712 HCH-Chr12:4438182 HCH12g1552 HCH-Chr12:42152654 9.80E-37 dispersed
HCH11g0954 HCH-Chr11:40940819 HCH12g0712 HCH-Chr12:4438182 1.30E-36 transposed
HCH6g0377 HCH-Chr6:6478665 HCH12g0712 HCH-Chr12:4438182 6.30E-34 transposed
HCH9g1054 HCH-Chr9:8947294 HCH12g0712 HCH-Chr12:4438182 2.90E-30 transposed
HCH12g0712 HCH-Chr12:4438182 HCH14g0430 HCH-Chr14:33325126 2.00E-50 wgd
HCH12g0712 HCH-Chr12:4438182 HCH4g0278 HCH-Chr4:1786307 1.30E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32695 PF01486 K-box 4.90E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0712 K09264 - csv:101203545 370.163