Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0718 ATGGAGCTGAATGAACAATATTTCTTAGACGAGCTACAAGCTCTAAGAAGAGAAATGAGTTGGGAATTAGCCATTCCCACAGAAATGAATGAGCTTATTTCCAGTTCCAATGGCTGGAATAATTTCAATTCTTCTCATCAAAAGTCTGATAATTTTCTTGAAATTTCTTCCTTCCCAGAATCTAGTTTCTCTTTGTCTATCGATCAGCAAAATTTAAGTTATCTTTTGAGTGAACAAGTCCATTATCCATTAGCCAGTGATCAATTTTCAGCAGCAGTTCCACAGATCAGTAATGGAGATTCGATATCGTTTAGTACCATGGAGACTACTCCTAGTAATTTTGATGTTCATAATGGAGATCAATATCCCATTACTAGTATGGAAGAAGAAGAGCTTGGAATTCTTGAGGATGAGATTCATAATCTTGAAGTGCAGGCTAGTTGCAAACTTGAGCCTGATCAATCTCCTGAAATCCCTGTATTCATCACCGGTTCGTGCGATTTCCGACAAAAGAATTCGAGTAAGAAGTTGCACGGGCAGCCCTCAAAGAATCTCATGGCGGAGAGACGACGGAGGAAGCGATTGAATGATCGCCTCTCCATGCTTAGATCCATCGTTCCGAAAATAAGCAAGATGGACCGAACCGCGATACTCGCCGATGCTATCGAGTATGTGAAGGAACTATTGGAGAAGATCAACAATTTGCAACGAGAAATTGAAGTGGAGAATCCGAACCAGTTAGAGACTATGAGCATTTTCAGAGATGGAAAACCAAATGAATATTTGGTCAGAAATTCACCAAAATTTAACGTAGAAAGAAGAAATATGGACACTCGGATCGAGATTTGCTGTGCGGCTAAGCCTGGATTGCTGTTATCTACAGTGCACACTATTGAAGCATTAGGTCTTGATATTCAGCAGTGTGTCATCAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGCTTTGAGGAAATGGAGCAGAGAGCAGCATTGAGCACGAATGAAGTAAAGCAAGCCTTATTTGAGAATGCTGGATATGGAGGAAGATGCCTCTAG 1059 40.42 MELNEQYFLDELQALRREMSWELAIPTEMNELISSSNGWNNFNSSHQKSDNFLEISSFPESSFSLSIDQQNLSYLLSEQVHYPLASDQFSAAVPQISNGDSISFSTMETTPSNFDVHNGDQYPITSMEEEELGILEDEIHNLEVQASCKLEPDQSPEIPVFITGSCDFRQKNSSKKLHGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELLEKINNLQREIEVENPNQLETMSIFRDGKPNEYLVRNSPKFNVERRNMDTRIEICCAAKPGLLLSTVHTIEALGLDIQQCVISCFNDFAIQASCFEEMEQRAALSTNEVKQALFENAGYGGRCL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4507731 4509438 + evm.model.ptg000002l.941 HCH12g0718 555565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0718 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983(InterPro)
HCH12g0718 352 SMART finulus 185 234 IPR011598 GO:0046983(InterPro)
HCH12g0718 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 248 IPR036638 GO:0046983(InterPro)
HCH12g0718 352 Coils Coil 218 238 - -
HCH12g0718 352 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 153 347 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH12g0718 352 Pfam Helix-loop-helix DNA-binding domain 186 228 IPR011598 GO:0046983(InterPro)
HCH12g0718 352 Pfam Plant bHLH transcription factor, ACT-like domain 271 341 IPR054502 -
HCH12g0718 352 Coils Coil 125 145 - -
HCH12g0718 352 Gene3D - 170 244 IPR036638 GO:0046983(InterPro)
HCH12g0718 352 CDD ACT_UUR-ACR-like 278 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0718 HCH-Chr12:4507731 HCH9g0022 HCH-Chr9:154219 3.00E-34 dispersed
HCH12g0718 HCH-Chr12:4507731 HCH14g0426 HCH-Chr14:33292730 1.60E-67 wgd
HCH12g0718 HCH-Chr12:4507731 HCH4g0295 HCH-Chr4:1901838 1.00E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32696 PF00010 HLH 7.80E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0718 - - - 0.0