Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0725 ATGAATTTCCACAACATGTCTCTTTTTCAACTTCTCTTCATCACCTCTCTCCTCCTTCTTTGTTGCTTCCATGGAACAAAATCTGATGAGCTTCAAATTCTTATCAAAATCAAAACTTCACTTCAAAATGCCAACACCCATGTCTTCAAACCCTGGGAATCCAACAACCATGTCTGTAATTTCACAGGAATCACCTGCCATTCAAATGGGTTGGTCCAAGAAATCGATCTTTCCAATCAGAACTTATCAGGGGTTGTTCCTTTTGATTCCATTTGTCAGCTTCCATCATTGGAAAAGCTTGCTCTTGGGTTCAATTCCTTGAATGGTGAAATAACAGAGGATTTGAACAATTGTGTGGATTTAAACTACTTGGATTTGGGAAACAATATGTTTTCTGGGTCATTCCCAGATGTAAATTTGCTGTCCCAAATGGAGTTTCTATATCTGAATCTCAGTGGGATTTCAGGCAAATTTCCATGGAAATCGCTTCAAAACATGACTGGTTTGATCCATTTAAGCATTGGAGATAATGCTTTTGAGAACACAACATTCCCAAATGAAATCACAAATCTCAAGAAGCTGAATTTGCTTTACTTGGCAAATTGCAGCTTACAAGGAAGCATTCCAAAGTCAATAGGAAATCTCACAAACCTTGAGAATTTAGAACTTTCAAGCAATTACTTATCAGGGAATATCCCAGAAGAGATTCAAAATCTTCAGAATCTTTGGCAGCTGGAGCTTTACCTCAACCATTTAACAGGAACTCTCCCAATAGGATTTAGATACTTGACAAAGCTTCAAAATTTGGATGCTTCCACTAACTCTCTCTCTGGAAATCTCTCTGAGTTGAGATTTTTAACCAACTTGGTTTCTATACAGCTTTTTGAAAACCAATTCTCAGGGGAGATTCCAATGGAGTTTGGTGATTTCAAATTTCTTATGAATATTTCTCTTTACACAAACAAATTCACGGGTTCTCTTCCAAAATCGCTGGGTTCTTTGTCGCCGCTGTATTACATTGATGCTTCTGAAAATCTTTTGACGGGGTCGATTCCTCCTGATATGTGTAAAAAAGGGAAAATGTGGAAGCTTCTTTTGTTGCAGAATAATCTGACCGGGGAAATCCCGGGCAGTTATGGTGATTGCCCGACTTTGACACGGTTTAGGGTTAGTCAAAATTTCCTGACCGGAGTCGTTCCTCCTGGAATTTGGGGATTGCCGAATATGAATTTGATTGACGTTGCTTCGAATCAATTGGAAGGTTCGATTACTTCCGACATCGGAAACGCGGTGTCTCTGTCGGAATTAGACGTCGGGAATAATCGATTCTCCGGACGTTTGCCGGCGGAGATTTCGAAAGCGAAGTCTCTTGTTTCGATTGACTTGAATAATAATCAGTTTTCCGGTGAAATTCCGATGACTATTGGAGAATTGAAGACTCTGTTTAGTCTCCAATTGGAAAGCAATAAATTTTCCGGTCCGATTCCGGAGACGATAGGGTCATGTAAATCCTTGAATCTCTTAAATCTCGCTGAGAATTCTCTCTCTGGAGAAATTCCTTCTTCTCTAGGGCTCCTTCGCGTTCTAAACTCTCTGAATCTCGCCGATAATGATCTAACCGGCGAAATTCCGTCGTCACTTTCAAATCTGAGGCTAAGCGAATTCAATCTTTCGAATAATCACTTAACCGGTCCGGTACCTGAATCTCTATCGATTGCTGCGTATAACGAGAGCTTCGCCGGAAACCCGGGCCTTTGCAGCACCGACGGCAGCCTTTTACGGCGATGTTCACCGGATTCCGGCATGTCTAAGGATGTCCGTACACTCGTAATTTGTTCCGCCGTTGGTTTATTTCTCATGGTGTTGACTTTAGGGTTATTTGTTTGCTCGAAGAAGAGTGAAAAAGACAGAGAGAGATCATTAAAAGAGGAGTCTTGGGATTTAAAATCATTCCATGTAATGACTTTCACTGAGGATGAGATTCTTGATTCCATAAAAGATGAGAATCTAATTGGAAAAGGTGGATCAGGAAATGTTTACAAAGTGACACTTGGGAATGGGAAAGAGTTTGCTGTGAAGCATATTTTGAACACTGATCCGTATGACAAGAAATCGAATCGGAGCACGTCGCCGATGCTCGGAAAACGTCGTGGGAAGCTGTCGGAGTTTGAATCGGAGGTGAAGTCTTTGAGCTCGATAAGACATGTGAATGTGGTGAAGTTGTATTGTAGTATAACGAGCGAGGAATCGAGTTTGTTGGTGTATGAATATATGCCGAATGGAAGCTTGTGGGATAGGCTTCATACGTCGAGAAAAATGGAGTTGGATTGGGAAACTAGGTACGAGATTGCGGTCGGGGCGGCAAAGGGATTGGAGTATTTGCACCACGGTTGCGACCGGCCGGTGATTCACCGGGATGTCAAGTCTAGTAATATATTGTTGGATGAGTGTCTCAAGCCTAGAATTGCTGATTTTGGGCTGGCCAAGATTGTTCACACAAATGGGTTAAAGGACACCACCACTCATGTCATTGCAGGAACTCATGGCTACATTGCTCCAGAATATGGGTACAGTTTCAAAATAAACGAGAAGAGTGACGTGTATAGCTTTGGAGTTGTACTGATGGAGTTAGTGAGCGGAAAAAAGGCGATAGAAGCGGAGTTCGGAGAGAACAAAGATATCGTGAGCTGGGTATCGAGCAACTTGAAGACGAGAGAGAGTGTGTTGAGTTTAGTAGATTCAAGAATACCAGATGTGTTCAAAGAAGATGCAATAAAAATGTTGAGAATTGGAATTTTGTGCACAGCCAGAGTTCCAACAGAAAGACCCACAATGAGAAGTGTGATACAAATGTTGGAAGAAGCAAAACCATGCAAGCTAGTTGGGATTGTGATTAGCAAAGATGGTGGGAATGTTAGAAATTTAGATATCAACAAGCTTAATCCCAAATCTTAG 2955 41.46 MNFHNMSLFQLLFITSLLLLCCFHGTKSDELQILIKIKTSLQNANTHVFKPWESNNHVCNFTGITCHSNGLVQEIDLSNQNLSGVVPFDSICQLPSLEKLALGFNSLNGEITEDLNNCVDLNYLDLGNNMFSGSFPDVNLLSQMEFLYLNLSGISGKFPWKSLQNMTGLIHLSIGDNAFENTTFPNEITNLKKLNLLYLANCSLQGSIPKSIGNLTNLENLELSSNYLSGNIPEEIQNLQNLWQLELYLNHLTGTLPIGFRYLTKLQNLDASTNSLSGNLSELRFLTNLVSIQLFENQFSGEIPMEFGDFKFLMNISLYTNKFTGSLPKSLGSLSPLYYIDASENLLTGSIPPDMCKKGKMWKLLLLQNNLTGEIPGSYGDCPTLTRFRVSQNFLTGVVPPGIWGLPNMNLIDVASNQLEGSITSDIGNAVSLSELDVGNNRFSGRLPAEISKAKSLVSIDLNNNQFSGEIPMTIGELKTLFSLQLESNKFSGPIPETIGSCKSLNLLNLAENSLSGEIPSSLGLLRVLNSLNLADNDLTGEIPSSLSNLRLSEFNLSNNHLTGPVPESLSIAAYNESFAGNPGLCSTDGSLLRRCSPDSGMSKDVRTLVICSAVGLFLMVLTLGLFVCSKKSEKDRERSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTLGNGKEFAVKHILNTDPYDKKSNRSTSPMLGKRRGKLSEFESEVKSLSSIRHVNVVKLYCSITSEESSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDECLKPRIADFGLAKIVHTNGLKDTTTHVIAGTHGYIAPEYGYSFKINEKSDVYSFGVVLMELVSGKKAIEAEFGENKDIVSWVSSNLKTRESVLSLVDSRIPDVFKEDAIKMLRIGILCTARVPTERPTMRSVIQMLEEAKPCKLVGIVISKDGGNVRNLDINKLNPKS 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4598042 4601090 + evm.model.ptg000002l.934 HCH12g0725 555572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0725 984 Pfam Protein kinase domain 667 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0725 984 Gene3D Transferase(Phosphotransferase) domain 1 758 961 - -
HCH12g0725 984 PANTHER RECEPTOR-LIKE PROTEIN 55 297 953 - -
HCH12g0725 984 Pfam Leucine Rich Repeat 432 453 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 Pfam Leucine Rich Repeat 529 550 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 Pfam Leucine Rich Repeat 552 571 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
HCH12g0725 984 ProSiteProfiles Protein kinase domain profile. 665 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0725 984 FunFam Receptor-like protein kinase HAIKU2 648 757 - -
HCH12g0725 984 SUPERFAMILY RNI-like 315 571 - -
HCH12g0725 984 SUPERFAMILY Protein kinase-like (PK-like) 654 953 IPR011009 -
HCH12g0725 984 FunFam Receptor-like protein kinase 7 111 360 - -
HCH12g0725 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 473 593 - -
HCH12g0725 984 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 964 - -
HCH12g0725 984 SUPERFAMILY RNI-like 74 396 - -
HCH12g0725 984 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524(InterPro)
HCH12g0725 984 Gene3D Ribonuclease Inhibitor 183 285 IPR032675 -
HCH12g0725 984 Gene3D Ribonuclease Inhibitor 27 182 IPR032675 -
HCH12g0725 984 FunFam Inactive leucine-rich repeat receptor-like protein kinase 381 472 - -
HCH12g0725 984 SMART serkin_6 665 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0725 984 Gene3D Phosphorylase Kinase; domain 1 648 757 - -
HCH12g0725 984 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
HCH12g0725 984 Gene3D Ribonuclease Inhibitor 286 600 IPR032675 -
HCH12g0725 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0725 HCH-Chr12:4598042 HCH3g0677 HCH-Chr3:4775996 1.40E-84 dispersed
HCH12g0725 HCH-Chr12:4598042 HCH12g0726 HCH-Chr12:4611859 9.80E-91 tandem
HCH12g0725 HCH-Chr12:4598042 HCH14g0409 HCH-Chr14:33102975 8.90E-76 wgd
HCH12g0725 HCH-Chr12:4598042 HCH4g0303 HCH-Chr4:1977884 3.70E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81115 PF00069 Pkinase 3.60E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0725 - - - 0.0