Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0726 ATGGCTTTCCTCTCGTCCTTTTTCTTTCTTCTTTTCTTACTTTTTTCTTCTTCTTCTTCTTCTTCATTTCAAGCTATCAACGCCAACCAATCTCAGTTTTTCTCTCTCATGCAAAACACTATCAAAGGAATCTCACTTCTCTCTGATTGGAATGGAAAACCCTACTGCAATTTCACCGGTATCAAATGTAACAACCAAGGCTCAGTCGTCGAAATCGATCTCTCAGGTCACTCATCGCTTTCCGGTACTTTCCCACCGGACGTCTGCTCCTACTTACCGGAATTACGTATCCTCCGTCTCGGACGCAGTGGCTTACGTGGAACCTTCCCACATGGAATCACAAACTGCTCTTTATTACAAGAACTTGACCTGAGCTCTCTATACCTCACCGGCTCACTGCCAGACTTCTCGGCCATGAAGACGAGCCTCCGATTTCTCGACATATCGTATAACAACTTCACCGGCGACTTCCCGTTGTCGGTTTTCAGTTTAACAAATCTCGAGAGCCTCAATTTTAATGAAGATAATAATCTCAACTTATGGGAATTGCCGGAAAATATTTCCTGCATGACGAAGTTGAAGTTAATGGTGTTGACTACTTGTATGTTGCAAGGTCCGATTCCGGCGACGATTGGAAATATGACGGCGCTCGTTGACTTGGAATTAAGTGGGAATTTCATCACTGGAAAAATTCCCAAAGAAATCGGATTGTTGAAGAATTTAAGACAGCTGGAACTTTATTATAATTTGTTGGTGGGAGAAATTCCAGAGGAGATTGGAAATTTGACTGAGCTCGTTGACTTCGACATGTCGGTCAACAGGTTGACCGGGACAGTCCCGGAATCGATATGTCGTCTCCCGAAGCTTGAAGTTTTACAGCTTTATAACAACAGCCTCACCGGGGAGATTCCTCGTACGATTTCTAATTCCACGTCACTTACCATGTTGTCTCTTTACGACAATTATATGACGGGACAAGTACCGTACGATTTGGGTCAACGGTCGGCGATGGTCGTTCTCGATTTATCGGAAAACTATTTCTCCGGTCCGTTACCGACGGGTGTTTGCGGCGGAGGTAAACTGCTTTATTTTTTGGTGTTGGAAAATAGATTCACGGGTGAGATTCCGTCCTCGTACGGGACGTGTTTGTCTCTTTTAAGGTTTCGCGTGAGTTCGAATTTGTTACGAGGGGTAATTCCGGACGGGCTTTTTGGTCTTCCTCATGTTTCGATTCTTGATTTTGGGTTTAATAATTTGAGCGGCGGAATTCCCGATTCCTTTGTGAAAGCTGGGAATTTGTCGGAATTGTTCATGCAAAGTAATCGGATTTCTGGGGTTTTGCCGAGGGAGATTTATGGAGCGGTTAATTTGGTTAAGATTGATTTAAGTAATAATCTTTTTTCTGGGCCAATTCCATGGGAAATTGGGAAATTGAAGAAATTAAATTTGCTTCTTTTACAAGGAAATAGATTGAATTCTTCGATTCCCAATTCACTTTCTCAGCTTAAATCTCTTAATGTTCTTGATTTGTCTCAAAATCTCTTAACTGGAAAAATTCCAGAAAGTCTCTGTGAATTGTTGCCTAATTCAATCAATTTCTCAAACAATCAACTTTCTGGCCCAATTCCTCTTTCTCTAATCAAAGGTGGATTAGTGGAAAGCTTTTCAGGAAACCCAGGACTCTGTGTCTCTGTCTATCTTGATTCATCAGATAAAAAACCATTCCCCATTTGCTCTCAAAACTACAACAAAAAACGTGTGAATTCCATTTGGGCGATCGGAGTTTCCGCGTTTATCATCTTCCTCGGTTTCGCCCTGTTCTTAAAACGTCGATTGAGCAGAGAAAAATTGATAGCGGAACACGACGAGACAATCTCATCATCTTCGGCCTTTTTCTCCTACGACGTCAAAAGCTTTCACCGGATCAGCTTCGACCCGCGAGAGATAATCGAGTCGATGGTTGATAAGAACATTGTGGGGCAGGGGGGATCGGGGACGGTTTACAAAATCGAATTGGGCAGCGGAGAGGTGGTGGCGGTGAAGAGATTATGGAGCAAAAAAGGAAAAGCTGAAATGGGAATGGATCATGATCAGGTGTTTATAGACAAAGAATTGAAGACTGAAGTAGAGACATTGGGGAGTATAAGGCATAAGAATATAGTGAAATTGTATTGCTATTTTTCAAGCTTGGATTGCAGTCTTTTGGTGTATGAATATATGAGAAATGGGAATTTGTGGGATGCATTGCATAAAGGATTGATTCAATTGGATTGGCCAATAAGGCATCAGATTGGCCTTGGAATTGCTCAAGGATTGGCTTATCTTCATCATGATTTGGTGCCTTCGATTATTCATAGAGATATCAAGACGACGAATATATTATTAGATGTGAATTATCATCCAAAAGTTGCTGATTTTGGAATTGCTAAAGTTCTTCAAGCCAGAGCGGGGAAGGATTCTACCACCACTGTTGTTGCTGGAACTTATGGTTATCTTGCTCCTGAGTATGCTTATTCATCGAAAGCGACGACGAAGTGCGACGTATACAGCTTCGGGATCGTGTTAATGGAACTGATAACAGGGAAGAAACCAGTGGAGGCAGAGTTTGGAGAGAACAAGAACATAATCTATTGGGTTTCAAACAAAGTTGATACGAAAGAAGGGGCAATGGAAGTTCTTGACAAACGAGTAACGGCGTCGTTTCGTGACGATATGATTCAAGTTTTGAGGATCGCCATTCGTTGTACTTACAAGAATCCAGCTCTTCGACCAACCATGAAGGAAGTGGTGCAGCTTCTGATTGAAGCTGACCCTTCAACTTCAAGATTCCATTCTTACAAATCTCCTAAAGACTCCACCAAAATCAACAACAACCCATTTCAACTATGA 2889 41.99 MAFLSSFFFLLFLLFSSSSSSSFQAINANQSQFFSLMQNTIKGISLLSDWNGKPYCNFTGIKCNNQGSVVEIDLSGHSSLSGTFPPDVCSYLPELRILRLGRSGLRGTFPHGITNCSLLQELDLSSLYLTGSLPDFSAMKTSLRFLDISYNNFTGDFPLSVFSLTNLESLNFNEDNNLNLWELPENISCMTKLKLMVLTTCMLQGPIPATIGNMTALVDLELSGNFITGKIPKEIGLLKNLRQLELYYNLLVGEIPEEIGNLTELVDFDMSVNRLTGTVPESICRLPKLEVLQLYNNSLTGEIPRTISNSTSLTMLSLYDNYMTGQVPYDLGQRSAMVVLDLSENYFSGPLPTGVCGGGKLLYFLVLENRFTGEIPSSYGTCLSLLRFRVSSNLLRGVIPDGLFGLPHVSILDFGFNNLSGGIPDSFVKAGNLSELFMQSNRISGVLPREIYGAVNLVKIDLSNNLFSGPIPWEIGKLKKLNLLLLQGNRLNSSIPNSLSQLKSLNVLDLSQNLLTGKIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDKKPFPICSQNYNKKRVNSIWAIGVSAFIIFLGFALFLKRRLSREKLIAEHDETISSSSAFFSYDVKSFHRISFDPREIIESMVDKNIVGQGGSGTVYKIELGSGEVVAVKRLWSKKGKAEMGMDHDQVFIDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMRNGNLWDALHKGLIQLDWPIRHQIGLGIAQGLAYLHHDLVPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARAGKDSTTTVVAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVTASFRDDMIQVLRIAIRCTYKNPALRPTMKEVVQLLIEADPSTSRFHSYKSPKDSTKINNNPFQL 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4611859 4614841 + evm.model.ptg000002l.933 HCH12g0726 555573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0726 962 SUPERFAMILY Protein kinase-like (PK-like) 635 933 IPR011009 -
HCH12g0726 962 Gene3D Ribonuclease Inhibitor 288 572 IPR032675 -
HCH12g0726 962 ProSiteProfiles Protein kinase domain profile. 653 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0726 962 Gene3D Phosphorylase Kinase; domain 1 636 739 - -
HCH12g0726 962 SUPERFAMILY L domain-like 255 566 - -
HCH12g0726 962 FunFam Leucine-rich repeat receptor-like protein kinase 180 282 - -
HCH12g0726 962 ProSitePatterns Protein kinases ATP-binding region signature. 659 681 IPR017441 GO:0005524(InterPro)
HCH12g0726 962 Gene3D Transferase(Phosphotransferase) domain 1 740 955 - -
HCH12g0726 962 FunFam receptor protein-tyrosine kinase CEPR1 636 739 - -
HCH12g0726 962 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 306 934 IPR051564 GO:0016020(PANTHER)
HCH12g0726 962 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
HCH12g0726 962 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
HCH12g0726 962 Pfam Leucine Rich Repeat 288 309 IPR001611 GO:0005515(InterPro)
HCH12g0726 962 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
HCH12g0726 962 Pfam Leucine Rich Repeat 504 526 IPR001611 GO:0005515(InterPro)
HCH12g0726 962 SUPERFAMILY RNI-like 68 348 - -
HCH12g0726 962 SMART serkin_6 653 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0726 962 SMART LRR_typ_2 286 310 IPR003591 -
HCH12g0726 962 SMART LRR_typ_2 92 116 IPR003591 -
HCH12g0726 962 SMART LRR_typ_2 238 262 IPR003591 -
HCH12g0726 962 SMART LRR_typ_2 502 526 IPR003591 -
HCH12g0726 962 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 740 951 - -
HCH12g0726 962 MobiDBLite consensus disorder prediction 941 962 - -
HCH12g0726 962 FunFam Receptor protein-tyrosine kinase CEPR1 286 571 - -
HCH12g0726 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0726 962 Pfam Protein kinase domain 656 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0726 962 Gene3D Ribonuclease Inhibitor 26 177 IPR032675 -
HCH12g0726 962 Gene3D Ribonuclease Inhibitor 178 282 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0726 HCH-Chr12:4611859 HCH4g0303 HCH-Chr4:1977884 1.30E-183 dispersed
HCH12g0725 HCH-Chr12:4598042 HCH12g0726 HCH-Chr12:4611859 9.80E-91 tandem
HCH12g0726 HCH-Chr12:4611859 HCH4g0313 HCH-Chr4:2041356 2.50E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81116 PF00069 Pkinase 4.10E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0726 - - - 0.0