Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0744 ATGGCAGTAACCTCCAGCTGCAAGGAAATTATGGATAATGGTAAGTACGTAAGGTACACTCCAGAGCAAGTTGAAGCTTTAGAAAGACTTTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAACAGCTTATTAGAGAGTGCCCAATTCTCTCCCACATTGAACCTAAACAAATCAAAGTTTGGTTCCAAAATCGAAGATGTAGAGAGAAGCAGAGAAAGGAAGCTTCACGTCTGCAAACGGTGAACAGGAAGTTGACGGCTATGAATAGGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTTTCTCAGCTTGTTTATGCGAATAGCTATTTTCGTCAACAGACTCAGAATACGACCTTAACCACCACGGACACGAGTTGTGAGTCAGTGGTGACGAGTGGTCAGCAGCATTTGACTCCGCCGAATCCTCCAAAGGATGCTAGTCCTGCTGGACTTTTATCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCAACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCGGCTCGTGCTTGCGGCCTTGTGGGTCTTGAACCTACGAGAGTTGCTGAAATTCTCAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCGGTCGATGTTCTAAATGTTCTATCAACCGGAAATGGGGGAACCATAGAGCTTCTTTACATGCAGCTCTATGCACCTACTACTCTTGCGCCTTCTCGTGATTTTTGGCTGCTGCGCTACACTTCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTCAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCGGTACAAAACTTCGTGAGAGCGGAAATGCTACCAAGTGGGTATTTGATACGACCGTGCGAAGGTGGCGGATCGATAATCCATCTAGTTGACCATATGGACCTGGAACCTTGGAGTGTGCCTGAAGTGTTGCGGCCACTGTATAAGTCATCCACTCTGCTTGCTCAGAAAAACACAATGGCAGCCTTACGCTTGCTAAGACAGATTTCACAAGAAGTTTCTCAACCACATGTTACTGGTTGGGGAAGACGTCCTACTGCTCTTCGGGCTCTTAGTCAGAGATTAAGCAGGGGTTTCAATGAAGCAGTTAATGGGTTTTCAGATGAGGGATGGACTATGTTAGAAAGTGATGGCATTGATGATGTTACACTTCTTGTCAACACGTCTCATAGGAAGACAATGATGGGTGCAGATATTTCATATTCTAACGGCTTTCCATCGATCAACAACGCCGTGCTTTGTGCCAAAGCATCAATGCTATTACAGAATGTCACTCCAGCAATGCTAATTAGGTTCTTGCGAGAACACCGATCAGAATGGGCAGACAGCAGTTTTGATGCTTACTCAGCTGCAGCAATTAAGACAGGTCACTGTGGTTTACCAGGATCTCATGCTGGAAGTTTTGGGGGTCAGATTATTCTTCCATTGGCTCAAACAGTTGAGCATGAAGAGTTTATGGAAGTCATTAAATTCGAAAACATGGGCCACTATAGAGATGATATGCTCATGCCTGGTGACATCTTCCTCCTCCAACTTTGCAATGGCGTGGATGAGAACGCAGTTGGAACTTCCGCTGAACTTATCTTCGCTCCAATTGACGCTTCTTTTTCTGATGATGCACCTATTCTACCATCTGGTTTCCGCATCATTCCTCTTGAATCTGGGATGGATGCTTCGAGTCCTAACCGCACACTCGATCTTGCTTCAGCTCTCGATGTCGGACCTGCAGGGAATAGAGCTTCTGGTGATTATGCTGGTCCATCCGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGCATTTGATGTCCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGAAGCATTATAGCATCCGTTCAGAGGGTGGCACTGGCTCTTTCCCCTTCACTTATTGGTCCGCATGCTAATCTTCAGATTCCGGGTGGTGCTCCCGAAGCACAAACACTTGCTCGTTGGATTTGTCATAGCTACAGTTGCTATCTGGGCATGGAACTACTGAAAAATGAAGGAAGAGAATCCGTTCTCAAATCCCTCTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCCAATTTTACATTTGCAAATCAGGCTGGACTTGATATGCTTGAGACAACCTTAGTAGCTCTTCAAGACATTACTCTGGAGAAGATTTTTGATGATAATGGAAAGAAAACCTTAAGCTCAGAGTTCCCGCAGATAATGCAGCAGGGTTTTCTCTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGCAGAGCAGTTACCTATGAGAAAGCTGTAGCATGGAAGGTTTTGGATGAAGAAGAAAATGCTCATTGTATTTGCTTCATGTTTATTAACTGGTCTTTTATTTGA 2508 45.26 MAVTSSCKEIMDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYANSYFRQQTQNTTLTTTDTSCESVVTSGQQHLTPPNPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPSRDFWLLRYTSVLEDGSLVVCQRSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHLVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPHVTGWGRRPTALRALSQRLSRGFNEAVNGFSDEGWTMLESDGIDDVTLLVNTSHRKTMMGADISYSNGFPSINNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSFDAYSAAAIKTGHCGLPGSHAGSFGGQIILPLAQTVEHEEFMEVIKFENMGHYRDDMLMPGDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLESGMDASSPNRTLDLASALDVGPAGNRASGDYAGPSGKSKSVMTIAFQFAFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSLIGPHANLQIPGGAPEAQTLARWICHSYSCYLGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLSSEFPQIMQQGFLCLQGGVCLSSMGRAVTYEKAVAWKVLDEEENAHCICFMFINWSFI 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4735806 4741283 - evm.model.ptg000002l.915 HCH12g0744 555591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0744 835 SUPERFAMILY Bet v1-like 158 368 - -
HCH12g0744 835 SMART HOX_1 12 78 IPR001356 GO:0003677(InterPro)
HCH12g0744 835 ProSiteProfiles START domain profile. 149 363 IPR002913 GO:0008289(InterPro)
HCH12g0744 835 SMART START_1 158 368 IPR002913 GO:0008289(InterPro)
HCH12g0744 835 Gene3D - 193 370 IPR023393 -
HCH12g0744 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 835 IPR044830 GO:0003700(InterPro)
HCH12g0744 835 Pfam START domain 159 367 IPR002913 GO:0008289(InterPro)
HCH12g0744 835 Pfam MEKHLA domain 694 834 IPR013978 -
HCH12g0744 835 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677(InterPro)
HCH12g0744 835 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
HCH12g0744 835 Gene3D - 8 81 - -
HCH12g0744 835 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
HCH12g0744 835 CDD homeodomain 15 75 IPR001356 GO:0003677(InterPro)
HCH12g0744 835 CDD bZIP 67 106 - -
HCH12g0744 835 Coils Coil 84 104 - -
HCH12g0744 835 CDD START_ArGLABRA2_like 153 368 - -
HCH12g0744 835 Pfam Homeodomain 15 73 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0744 HCH-Chr12:4735806 HCH4g1429 HCH-Chr4:10491100 0.00E+00 dispersed
HCH12g0744 HCH-Chr12:4735806 HCH3g0857 HCH-Chr3:6704258 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32698 PF01852 START 1.50E-53 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0744 K09338 - csv:101218438 1561.58