Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0746 ATGGAAAGACCGGAATATTTCCAAACCGGGTTTTGCTCACAATTCGTAACGGAAAACCGACAGTCATCTCCCGACAATAATGTCGGTGCCGATCATTTTATCGTGGAGGACCTCCTCGACTTCTCCAATGACGACGACAATATCTTCACCGACGCCGCTTTCGACAACCAAACCGGAAGCTCCACCGATTCTTCCACTCTCACGGTACTCGATTCCGGCAATTCCTCTTCCGACCCCGCTTTCGGACACCATTGTTTTTCCGACGTCAACTTTTCAACCGACCTTTGCTTACCGTACGATGATTTAGCTGAGCTGGAATGGGTTTCAAGTTTTGTGGAAGAATCATTCTCCACTGAGGATTTAGAGAAGCTCAGTTTGATATCGGGTATGAATTCCCGGGCCGACGGTGCATCCAAACCCGGAGAATTTCGACCCGAACTCAACCGAAATAACCACCCGGTCTTCCACCCCGAAATGTCGGTTCCGGCTAAAGCCCGTAGTAAACGCTCACGTGCTGCCCCCTGCATCTGGAATTCTGGTCTATCCGTCCCCGTCATCTCTCCGGCCACTTCCTCATCGGAAACGGATGTTTACGTGACGTCACATCCAAGCACCGGCACCAAAACCGTGAAATCCGCCACGAAGAAGAAGGAAAATTCCGACGACCCATCGTCCGGGAACAATGGGGAGGGCCGGAAGTGTCTCCATTGCGCCACCGACAAAACGCCGCAATGGCGAACGGGGCCGATGGGACCGAAGACGTTGTGTAATGCTTGCGGGGTCCGGTACAAGTCCGGCCGTCTTGTACCGGAATATAGGCCGGCAGCGAGCCCCACGTTTGTGCTGACGAAGCATTCAAATTCTCACCGGAAAGTGGTGGAACTCCGACGACAGAAAGAGTTTTTGAAGGCCCAACAACAATACATTCGTCATGAGAATTCGGTGTTTGATGTTTCCAACAACGACGATTATTTGATCCACCAACAAATGGGGCCGGACTTTGGCTAG 1008 51.88 MERPEYFQTGFCSQFVTENRQSSPDNNVGADHFIVEDLLDFSNDDDNIFTDAAFDNQTGSSTDSSTLTVLDSGNSSSDPAFGHHCFSDVNFSTDLCLPYDDLAELEWVSSFVEESFSTEDLEKLSLISGMNSRADGASKPGEFRPELNRNNHPVFHPEMSVPAKARSKRSRAAPCIWNSGLSVPVISPATSSSETDVYVTSHPSTGTKTVKSATKKKENSDDPSSGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVVELRRQKEFLKAQQQYIRHENSVFDVSNNDDYLIHQQMGPDFG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4758232 4759326 + evm.model.ptg000002l.913 HCH12g0746 555593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0746 335 SMART GATA_3 228 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 MobiDBLite consensus disorder prediction 192 234 - -
HCH12g0746 335 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 FunFam GATA transcription factor 224 311 - -
HCH12g0746 335 CDD ZnF_GATA 233 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
HCH12g0746 335 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 PIRSF Txn_fac_GATA_plant 14 323 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH12g0746 335 MobiDBLite consensus disorder prediction 192 210 - -
HCH12g0746 335 Pfam GATA zinc finger 234 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 Gene3D - 225 305 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH12g0746 335 PANTHER GATA TRANSCRIPTION FACTOR 32 300 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0746 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0746 HCH-Chr12:4758232 HCH4g1427 HCH-Chr4:10471747 1.20E-72 dispersed
HCH12g0746 HCH-Chr12:4758232 HCH4g0320 HCH-Chr4:2095260 1.20E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0746 . 33 334 C2C2-Gata Transcription Factor Family AT5G25830 51.4 2.4e-73 272.7
HCH4g0320 . 69 357 C2C2-Gata Transcription Factor Family AT5G25830 51.7 1.4e-65 246.9
HCH13g1375 . 24 292 C2C2-Gata Transcription Factor Family AT3G51080 50.9 6.8e-54 208.0
HCH14g0625 . 92 269 C2C2-Gata Transcription Factor Family AT4G36240 51.9 8.6e-41 164.1
HCH5g0328 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 2.0e-135 479.6
HCH6g1060 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.8 9.9e-127 450.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32699 PF00320 GATA 3.00E-15 CL0167 HCH TF