Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0746 | ATGGAAAGACCGGAATATTTCCAAACCGGGTTTTGCTCACAATTCGTAACGGAAAACCGACAGTCATCTCCCGACAATAATGTCGGTGCCGATCATTTTATCGTGGAGGACCTCCTCGACTTCTCCAATGACGACGACAATATCTTCACCGACGCCGCTTTCGACAACCAAACCGGAAGCTCCACCGATTCTTCCACTCTCACGGTACTCGATTCCGGCAATTCCTCTTCCGACCCCGCTTTCGGACACCATTGTTTTTCCGACGTCAACTTTTCAACCGACCTTTGCTTACCGTACGATGATTTAGCTGAGCTGGAATGGGTTTCAAGTTTTGTGGAAGAATCATTCTCCACTGAGGATTTAGAGAAGCTCAGTTTGATATCGGGTATGAATTCCCGGGCCGACGGTGCATCCAAACCCGGAGAATTTCGACCCGAACTCAACCGAAATAACCACCCGGTCTTCCACCCCGAAATGTCGGTTCCGGCTAAAGCCCGTAGTAAACGCTCACGTGCTGCCCCCTGCATCTGGAATTCTGGTCTATCCGTCCCCGTCATCTCTCCGGCCACTTCCTCATCGGAAACGGATGTTTACGTGACGTCACATCCAAGCACCGGCACCAAAACCGTGAAATCCGCCACGAAGAAGAAGGAAAATTCCGACGACCCATCGTCCGGGAACAATGGGGAGGGCCGGAAGTGTCTCCATTGCGCCACCGACAAAACGCCGCAATGGCGAACGGGGCCGATGGGACCGAAGACGTTGTGTAATGCTTGCGGGGTCCGGTACAAGTCCGGCCGTCTTGTACCGGAATATAGGCCGGCAGCGAGCCCCACGTTTGTGCTGACGAAGCATTCAAATTCTCACCGGAAAGTGGTGGAACTCCGACGACAGAAAGAGTTTTTGAAGGCCCAACAACAATACATTCGTCATGAGAATTCGGTGTTTGATGTTTCCAACAACGACGATTATTTGATCCACCAACAAATGGGGCCGGACTTTGGCTAG | 1008 | 51.88 | MERPEYFQTGFCSQFVTENRQSSPDNNVGADHFIVEDLLDFSNDDDNIFTDAAFDNQTGSSTDSSTLTVLDSGNSSSDPAFGHHCFSDVNFSTDLCLPYDDLAELEWVSSFVEESFSTEDLEKLSLISGMNSRADGASKPGEFRPELNRNNHPVFHPEMSVPAKARSKRSRAAPCIWNSGLSVPVISPATSSSETDVYVTSHPSTGTKTVKSATKKKENSDDPSSGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVVELRRQKEFLKAQQQYIRHENSVFDVSNNDDYLIHQQMGPDFG | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4758232 | 4759326 | + | evm.model.ptg000002l.913 | HCH12g0746 | 555593 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0746 | 335 | SMART | GATA_3 | 228 | 278 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0746 | 335 | MobiDBLite | consensus disorder prediction | 192 | 234 | - | - | |
HCH12g0746 | 335 | ProSitePatterns | GATA-type zinc finger domain. | 234 | 259 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0746 | 335 | FunFam | GATA transcription factor | 224 | 311 | - | - | |
HCH12g0746 | 335 | CDD | ZnF_GATA | 233 | 280 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0746 | 335 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 229 | 291 | - | - | |
HCH12g0746 | 335 | ProSiteProfiles | GATA-type zinc finger domain profile. | 228 | 264 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0746 | 335 | PIRSF | Txn_fac_GATA_plant | 14 | 323 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
HCH12g0746 | 335 | MobiDBLite | consensus disorder prediction | 192 | 210 | - | - | |
HCH12g0746 | 335 | Pfam | GATA zinc finger | 234 | 268 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0746 | 335 | Gene3D | - | 225 | 305 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
HCH12g0746 | 335 | PANTHER | GATA TRANSCRIPTION FACTOR | 32 | 300 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0746 | HCH-Chr12:4758232 | HCH4g1427 | HCH-Chr4:10471747 | 1.20E-72 | dispersed | |
HCH12g0746 | HCH-Chr12:4758232 | HCH4g0320 | HCH-Chr4:2095260 | 1.20E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32699 | PF00320 | GATA | 3.00E-15 | CL0167 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0746 | - | - | - | 0.0 |