Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0746 ATGGAAAGACCGGAATATTTCCAAACCGGGTTTTGCTCACAATTCGTAACGGAAAACCGACAGTCATCTCCCGACAATAATGTCGGTGCCGATCATTTTATCGTGGAGGACCTCCTCGACTTCTCCAATGACGACGACAATATCTTCACCGACGCCGCTTTCGACAACCAAACCGGAAGCTCCACCGATTCTTCCACTCTCACGGTACTCGATTCCGGCAATTCCTCTTCCGACCCCGCTTTCGGACACCATTGTTTTTCCGACGTCAACTTTTCAACCGACCTTTGCTTACCGTACGATGATTTAGCTGAGCTGGAATGGGTTTCAAGTTTTGTGGAAGAATCATTCTCCACTGAGGATTTAGAGAAGCTCAGTTTGATATCGGGTATGAATTCCCGGGCCGACGGTGCATCCAAACCCGGAGAATTTCGACCCGAACTCAACCGAAATAACCACCCGGTCTTCCACCCCGAAATGTCGGTTCCGGCTAAAGCCCGTAGTAAACGCTCACGTGCTGCCCCCTGCATCTGGAATTCTGGTCTATCCGTCCCCGTCATCTCTCCGGCCACTTCCTCATCGGAAACGGATGTTTACGTGACGTCACATCCAAGCACCGGCACCAAAACCGTGAAATCCGCCACGAAGAAGAAGGAAAATTCCGACGACCCATCGTCCGGGAACAATGGGGAGGGCCGGAAGTGTCTCCATTGCGCCACCGACAAAACGCCGCAATGGCGAACGGGGCCGATGGGACCGAAGACGTTGTGTAATGCTTGCGGGGTCCGGTACAAGTCCGGCCGTCTTGTACCGGAATATAGGCCGGCAGCGAGCCCCACGTTTGTGCTGACGAAGCATTCAAATTCTCACCGGAAAGTGGTGGAACTCCGACGACAGAAAGAGTTTTTGAAGGCCCAACAACAATACATTCGTCATGAGAATTCGGTGTTTGATGTTTCCAACAACGACGATTATTTGATCCACCAACAAATGGGGCCGGACTTTGGCTAG 1008 51.88 MERPEYFQTGFCSQFVTENRQSSPDNNVGADHFIVEDLLDFSNDDDNIFTDAAFDNQTGSSTDSSTLTVLDSGNSSSDPAFGHHCFSDVNFSTDLCLPYDDLAELEWVSSFVEESFSTEDLEKLSLISGMNSRADGASKPGEFRPELNRNNHPVFHPEMSVPAKARSKRSRAAPCIWNSGLSVPVISPATSSSETDVYVTSHPSTGTKTVKSATKKKENSDDPSSGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVVELRRQKEFLKAQQQYIRHENSVFDVSNNDDYLIHQQMGPDFG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4758232 4759326 + evm.model.ptg000002l.913 HCH12g0746 555593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0746 335 SMART GATA_3 228 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 MobiDBLite consensus disorder prediction 192 234 - -
HCH12g0746 335 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 FunFam GATA transcription factor 224 311 - -
HCH12g0746 335 CDD ZnF_GATA 233 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
HCH12g0746 335 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 PIRSF Txn_fac_GATA_plant 14 323 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
HCH12g0746 335 MobiDBLite consensus disorder prediction 192 210 - -
HCH12g0746 335 Pfam GATA zinc finger 234 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0746 335 Gene3D - 225 305 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH12g0746 335 PANTHER GATA TRANSCRIPTION FACTOR 32 300 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0746 HCH-Chr12:4758232 HCH4g1427 HCH-Chr4:10471747 1.20E-72 dispersed
HCH12g0746 HCH-Chr12:4758232 HCH4g0320 HCH-Chr4:2095260 1.20E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32699 PF00320 GATA 3.00E-15 CL0167 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0746 - - - 0.0