Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0749 ATGGCATCATCAGAACCTCAAAATTCAGAAGCTGAGAGCAGTTCCAATCCATTTACATCGCCGTCATCACCGCCGCCGGCCGAACAAAAACCCAAGCGCGTTAGAGACACGCTCTACCGCGGCGTTAGAATGCGCACATGGGGCAAATGGGTCTCGGAAATCCGCGAGCCAAGAAAGAAATCACGCATTTGGCTCGGAACTTTCCCGACTCCGGAAATGGCCGCCAGAGCCCACGACGTCGCCGCCCTCTTCATTAAAGGTAACACCGCCATCCTCAACTTCCCCGAACTCGCTCACTCTCTTCCCCGCCCAGTGTCCTTCGCTCCACGTGATGTCCAAGCCGCCGCAGCCAAGGCTGCCCAAATGGACCCATTCCATTCCACGTCATCATCTATTTCTTCCACTTCTTCTTCGCCTTCTCCGACGACGGATTCATCGCCGTCGTCGTCGATCGATGAACTCGGCGAGATCGTGAAGCTCCCGAATTTAGCTACGAATTATGAATTAAGCAACGAATTTGTGCTAATGGATTCGATTGATGGATGGGTTTATCCGCCGCCATGGTTAAGAAGTACGGAAGATTGCGAGTTTAATTATAACAACATTGATGAATCTGGAATTGAAGCTTCAAATTTGGGTGGTTTTTTCTGGGATTATTGA 660 50.61 MASSEPQNSEAESSSNPFTSPSSPPPAEQKPKRVRDTLYRGVRMRTWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALFIKGNTAILNFPELAHSLPRPVSFAPRDVQAAAAKAAQMDPFHSTSSSISSTSSSPSPTTDSSPSSSIDELGEIVKLPNLATNYELSNEFVLMDSIDGWVYPPPWLRSTEDCEFNYNNIDESGIEASNLGGFFWDY 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4783656 4784315 - evm.model.ptg000002l.910 HCH12g0749 555596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0749 219 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 MobiDBLite consensus disorder prediction 118 151 - -
HCH12g0749 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 174 IPR051032 -
HCH12g0749 219 MobiDBLite consensus disorder prediction 1 18 - -
HCH12g0749 219 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 MobiDBLite consensus disorder prediction 123 151 - -
HCH12g0749 219 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677(InterPro)
HCH12g0749 219 Pfam AP2 domain 38 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 CDD AP2 37 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0749 219 MobiDBLite consensus disorder prediction 1 36 - -
HCH12g0749 219 FunFam Ethylene-responsive transcription factor 2 37 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0484 HCH-Chr10:3943801 HCH12g0749 HCH-Chr12:4783656 2.60E-43 dispersed
HCH12g0749 HCH-Chr12:4783656 HCH8g0715 HCH-Chr8:43891189 9.60E-47 dispersed
HCH12g0749 HCH-Chr12:4783656 HCH4g0333 HCH-Chr4:2187450 1.00E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32700 PF00847 AP2 6.80E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0749 K09286 - csv:101217333 224.557