Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0749 | ATGGCATCATCAGAACCTCAAAATTCAGAAGCTGAGAGCAGTTCCAATCCATTTACATCGCCGTCATCACCGCCGCCGGCCGAACAAAAACCCAAGCGCGTTAGAGACACGCTCTACCGCGGCGTTAGAATGCGCACATGGGGCAAATGGGTCTCGGAAATCCGCGAGCCAAGAAAGAAATCACGCATTTGGCTCGGAACTTTCCCGACTCCGGAAATGGCCGCCAGAGCCCACGACGTCGCCGCCCTCTTCATTAAAGGTAACACCGCCATCCTCAACTTCCCCGAACTCGCTCACTCTCTTCCCCGCCCAGTGTCCTTCGCTCCACGTGATGTCCAAGCCGCCGCAGCCAAGGCTGCCCAAATGGACCCATTCCATTCCACGTCATCATCTATTTCTTCCACTTCTTCTTCGCCTTCTCCGACGACGGATTCATCGCCGTCGTCGTCGATCGATGAACTCGGCGAGATCGTGAAGCTCCCGAATTTAGCTACGAATTATGAATTAAGCAACGAATTTGTGCTAATGGATTCGATTGATGGATGGGTTTATCCGCCGCCATGGTTAAGAAGTACGGAAGATTGCGAGTTTAATTATAACAACATTGATGAATCTGGAATTGAAGCTTCAAATTTGGGTGGTTTTTTCTGGGATTATTGA | 660 | 50.61 | MASSEPQNSEAESSSNPFTSPSSPPPAEQKPKRVRDTLYRGVRMRTWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALFIKGNTAILNFPELAHSLPRPVSFAPRDVQAAAAKAAQMDPFHSTSSSISSTSSSPSPTTDSSPSSSIDELGEIVKLPNLATNYELSNEFVLMDSIDGWVYPPPWLRSTEDCEFNYNNIDESGIEASNLGGFFWDY | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4783656 | 4784315 | - | evm.model.ptg000002l.910 | HCH12g0749 | 555596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0749 | 219 | Gene3D | AP2/ERF domain | 38 | 96 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | MobiDBLite | consensus disorder prediction | 118 | 151 | - | - | |
HCH12g0749 | 219 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 17 | 174 | IPR051032 | - | |
HCH12g0749 | 219 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
HCH12g0749 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 38 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | MobiDBLite | consensus disorder prediction | 123 | 151 | - | - | |
HCH12g0749 | 219 | SUPERFAMILY | DNA-binding domain | 38 | 96 | IPR016177 | GO:0003677(InterPro) | |
HCH12g0749 | 219 | Pfam | AP2 domain | 38 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | CDD | AP2 | 37 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | PRINTS | Ethylene responsive element binding protein signature | 61 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | PRINTS | Ethylene responsive element binding protein signature | 39 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | SMART | rav1_2 | 38 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0749 | 219 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
HCH12g0749 | 219 | FunFam | Ethylene-responsive transcription factor 2 | 37 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0484 | HCH-Chr10:3943801 | HCH12g0749 | HCH-Chr12:4783656 | 2.60E-43 | dispersed | |
HCH12g0749 | HCH-Chr12:4783656 | HCH8g0715 | HCH-Chr8:43891189 | 9.60E-47 | dispersed | |
HCH12g0749 | HCH-Chr12:4783656 | HCH4g0333 | HCH-Chr4:2187450 | 1.00E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32700 | PF00847 | AP2 | 6.80E-14 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0749 | K09286 | - | csv:101217333 | 224.557 |