Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0771 ATGAGTAAGGAAGAGAATTTAACTGACGAGAAATTAGAAGCAAAGCAGATGGATGATGGAAGTTTGACATCTTCTAGTAATCAAGCACAGAATAAGCCATACGTTCACAAAGTTGGGATTCCACCAAAGCAAAACCTCTTCAAGGAATTCAAGATTACAGTGAAAGAAACTTTTTTTCCAGATGATCCACTTCGTTCGTTTAAAGATCAACCTCGTTCGCGGAAAATGATTTTAGGCATCCAAGCCGTCTTCCCGATACTCGAATGGGGAAGAGATTACAATTTGACTAAATTCAAAGGAGATCTTATTTCTGGACTCACTATTGCTAGTCTATGCATTCCTCAGGATATTGGGTATGCAAAGCTTGCAAATTTGGCTCCACAATATGGATTGTACTCCAGTTTCGCTCCTCCATTGATTTATGCTCTGATGGGAAGTTCAAGAGATATAGCTATAGGTCCAGTAGCTGTTGTTTCTCTCTTGTTGGGGACGCTACTACAAGCGGAAATCGATTCCTCCACGAATGCAGAAGAATACAGGCGGCTGGCATTTACAGCTACCTTTTTTGCAGGGGTTACTCAAGCCACCCTTGGGATGCTGAGGTTGGGATTCCTAATCGACTTCTTATCTCATGCTGCGATCGTTGGCTTCATGAGTGGAGCGGCCATCACTATTTCTCTCCAACAACTCAAAGGATTTCTTGGCATAAAGAAGTTCACAAAGAAAACAGATATTATCTCCGTCATTCATTCAGTATTTGGCTCAGTCCAACATGGGTGGAACTGGCAGACAATAGTCCTTGCAGCAAGCTTTCTTGGCTTTCTTCTATTTGCAAAATTCATAGGGAGGAAGAACAAGAAGCTCTTTTGGGTGCCTGCAATTGCTCCAATGATATCTATTGTGCTGTCTACCCTTTTTGTTTACTTAACTCATGCAGAAAAGAAAGGGGTAGAAATTGTGAGACACATAGAGAAAGGAATCAATCCCCCATCTGTGAAAGAAATATATTTCTCTGGTGAATACGTTCTAAAAGGTTTCCGGATTGGTGTTGTTGCTGGTATGATAGCGCTAACGGAAGCTGTTGCAATTGGAAGAACATTTGCCTCAATGAAAGACTATCAAATTGATGGGAACAAGGAAATGGTAGCAATGGGAGCCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAACAACAGGTTCGTTCTCTCGCTCGGCTGTAAACTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCCATTGTTGTATTCCTAACTCTGCAATTCTTGACCCCACTGTTCAAATATACTCCAAATGCAATTCTTTCTTCCATCATTATATCCGCTGTGATCAACCTGATCGATTTGCACGCAGCAATGTTGATATGGAAAATTGACAAGTTTGATTTTGTTGCTTGCATGGGAGCCTTCTTGGGTGTAATCTTTTTCTCTGTTGAGATAGGCCTTCTAATTGCGGTCTCCATATCCTTTGCAAAAATCCTTCTCCAAGTTACCAGACCAAGGACTGCAATTCTTGGAAATATCCCCAGGACAACTGTTTACCGAAATATACTGCAGTATCCAGAAGCAACCAGAATTCCCGGCGTCTTGATTGTTAGAGTCGATTCAGCAATTTACTTTTCGAACTCAAATTACATCAAGGAAAGGATATTGAGATGGCTGACTGATGAGGAAGAAGTTACAATGAAGTCATACCAAAACAGAATCCAATTTCTAATAGTCGAATTGTCACCTGTGACTGATATTGACACTAGTGGCATACATTCTTTTGAGGAGCTACATGTGAGTCTCAAAAAGAGAGAAGTTCAGCTTGTTCTGGCGAATCCAGGGCCCGTGGTGATTGACAAGCTTCACGCGTCAAATATCGTAAATTTGATTGGCCAAGACATGATCTTCCTCACAGTTGCAGATGCAGTCTCATCATGTTCTCCAAAATTGATGAATGATGCTTGA 1986 41.34 MSKEENLTDEKLEAKQMDDGSLTSSSNQAQNKPYVHKVGIPPKQNLFKEFKITVKETFFPDDPLRSFKDQPRSRKMILGIQAVFPILEWGRDYNLTKFKGDLISGLTIASLCIPQDIGYAKLANLAPQYGLYSSFAPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSSTNAEEYRRLAFTATFFAGVTQATLGMLRLGFLIDFLSHAAIVGFMSGAAITISLQQLKGFLGIKKFTKKTDIISVIHSVFGSVQHGWNWQTIVLAASFLGFLLFAKFIGRKNKKLFWVPAIAPMISIVLSTLFVYLTHAEKKGVEIVRHIEKGINPPSVKEIYFSGEYVLKGFRIGVVAGMIALTEAVAIGRTFASMKDYQIDGNKEMVAMGAMNVVGSMTSCYVTTGSFSRSAVNYMAGCQTAVSNIVMSIVVFLTLQFLTPLFKYTPNAILSSIIISAVINLIDLHAAMLIWKIDKFDFVACMGAFLGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGNIPRTTVYRNILQYPEATRIPGVLIVRVDSAIYFSNSNYIKERILRWLTDEEEVTMKSYQNRIQFLIVELSPVTDIDTSGIHSFEELHVSLKKREVQLVLANPGPVVIDKLHASNIVNLIGQDMIFLTVADAVSSCSPKLMNDA 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4957419 4960764 + evm.model.ptg000002l.888 HCH12g0771 555618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0771 661 Gene3D STAS domain 510 656 IPR036513 -
HCH12g0771 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
HCH12g0771 661 MobiDBLite consensus disorder prediction 1 33 - -
HCH12g0771 661 Pfam Sulfate permease family 98 479 IPR011547 GO:0016020(InterPro)
HCH12g0771 661 MobiDBLite consensus disorder prediction 18 33 - -
HCH12g0771 661 NCBIfam sulfate permease 85 649 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g0771 661 Pfam STAS domain 531 649 IPR002645 -
HCH12g0771 661 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH12g0771 661 FunFam Sulfate transporter 31 510 656 - -
HCH12g0771 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
HCH12g0771 661 PANTHER SULFATE TRANSPORTER 73 653 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g0771 661 MobiDBLite consensus disorder prediction 1 17 - -
HCH12g0771 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0771 HCH-Chr12:4957419 HCH13g0077 HCH-Chr13:463865 1.20E-299 dispersed
HCH13g0445 HCH-Chr13:3082178 HCH12g0771 HCH-Chr12:4957419 6.70E-110 transposed
HCH4g1880 HCH-Chr4:50423243 HCH12g0771 HCH-Chr12:4957419 4.90E-256 transposed
HCH12g0771 HCH-Chr12:4957419 HCH13g0076 HCH-Chr13:443930 1.90E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0771 K17470 - csv:101207370 1093.95