Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0776 ATGGCAGCTGCCTTAAATTTCTACGATGAAGGAACTGAAAAAGACCAGTTTGGTGGTGAATTAATGGAAGCAATTGAACCTTTTATTAAAGTTGCTTCCTCTATCTACACAAATTCCACATCCCCTTGTTTAAAACCAGCTTCTATCCCTACTACTTGTTCATTGAACAGCTACCTCAATTTCAATTTCTCCAATTCAATCCCTCAACAATCCAGTTTGTACCAAGATGGTTGCTCCTCTTCGATGAACCCGGTGTTGTTTTCGGAGGGCATCGGTTTCGACCAACCATTCACAATTGGACCTCATTACTTATCACCTCAAATCCTCCATACTCAACCTCAGATCAATCTTCAAAACCAAACTCCTCTAGCTTTTGCTTGGGGCCAAAACCAGCCACTACCCCTGCCACACCATGAACCACGAATGCCGAGCTTCCTTAGTCCTAAACCCGTTTCGATGAAGCAAGTGGGTTCGACTTCGAAAGCCACTAAGCTTTATAGAGGGGTTAGGCAGCGGCATTGGGGGAAATGGGTGGCGGAGATTCGATTGCCGAGGAACCGTACCCGACTTTGGCTAGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGATAAGGCAGCCTTCAAGCTTCGAGGTGACTCTGCCAGGCTCAATTTCCCACACCTTAAGCACCAAGGCTCCTGCATTGAAGGCGAATTCGGCCAGTATAGGCCCCTCCCTTCCTCTGTTGACGCTAAACTCCAAGCAATTTGTGATAATTTGGATAAGCCACAGAAGCAGGCCAATGCAAAGACGGCTGTCACCACGACTAAGAAGTCGAGGTCACAGTCTTGCTCGTTGGTAGCGCCTGGGGCTCAGGAAACTGCGGTGATTGGCAAAGTGGGATCAGAGAGTCGAGAGAATCATGTCAAGGTGGAAAACTCCTCGTCGCGGGTCGTGACCGAGAGCGACGAGTCTGCAGTATCTTCACCTTTGTCTGATCTCACATTCCCTGATTTCACTGAATTGCCATGGGATCAGAATCAAACTTGGGAGAATTCTATGTTAGAGAAGTACCCTTCTGAGATTGACTGGGCATCTATCTTTCCTCTATAA 1101 47.32 MAAALNFYDEGTEKDQFGGELMEAIEPFIKVASSIYTNSTSPCLKPASIPTTCSLNSYLNFNFSNSIPQQSSLYQDGCSSSMNPVLFSEGIGFDQPFTIGPHYLSPQILHTQPQINLQNQTPLAFAWGQNQPLPLPHHEPRMPSFLSPKPVSMKQVGSTSKATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCIEGEFGQYRPLPSSVDAKLQAICDNLDKPQKQANAKTAVTTTKKSRSQSCSLVAPGAQETAVIGKVGSESRENHVKVENSSSRVVTESDESAVSSPLSDLTFPDFTELPWDQNQTWENSMLEKYPSEIDWASIFPL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5017126 5018226 + evm.model.ptg000002l.883 HCH12g0776 555623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0776 366 CDD AP2 164 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 MobiDBLite consensus disorder prediction 309 328 - -
HCH12g0776 366 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 SMART rav1_2 165 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 363 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH12g0776 366 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 FunFam Ethylene-responsive transcription factor 2 164 223 - -
HCH12g0776 366 Pfam AP2 domain 165 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 MobiDBLite consensus disorder prediction 297 328 - -
HCH12g0776 366 Gene3D AP2/ERF domain 165 223 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0776 366 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0776 HCH-Chr12:5017126 HCH4g0203 HCH-Chr4:1221660 6.20E-75 dispersed
HCH12g0776 HCH-Chr12:5017126 HCH6g1261 HCH-Chr6:46921751 1.90E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32701 PF00847 AP2 2.80E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0776 K09286 - csv:101214560 464.536