Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0801 ATGGGAGCAGAATCAGGATTTGGGATGTTTTGTGAAACAATGAACAAAATAAAACCATACTTGGCCATGATTTCTCTGCAGTTTGGATATGCAGGGATGTACATAGTAACGATGCTTTGTCTGAAAAAGGGAATGAATCATTATGTTCTTGCTGTCTACCGCCATGCAGTTGCTACTCTTGTCATTTCTCCCTTCGCACTCGTCCTTGAAAGGAAAATAAGGCCAAAGATGACTTTCCCGATCCTCTTACGAATAATGCTGCTTGGATTTCTCGAGCCGGTACTTGATCAAAATCTGTACTACGTGGGGTTGAAGCTTACCTCTGCAACATTTACTTCTGCGACCGTCAATATTCTCCCTGCTGTTACCTTCATAATGGCTCTCATTTTCAGGCTGGAAAGTGTGAACTTTAAGAAGATTAGGAGCATTGCAAAGGTGGCGGGAACAGTGGTGACGATCGGAGGAGCAATGGTGATGACTCTATACAAAGGACCGATCGTCGATATCATTCACGGCCGGGGACGAAGCGCCGCTCATCAAGGATCTAACAGCAGCGAATCCGCCGATCAGCATTGGGTTCTTGGCACTCTCATGCTTTTAGGCAGTATTGTTGGTTGGTCTGGTTTCTTCATTTTGCAATCATTCACGCTGAGGAAGTACCCAGCAGAGCTCTCGCTGACAGCCTTGATATGCTTAACGGGGATGTTGGAAGGGACGGTCGTGACATTTATAATGGAACGTGATTTAAGCATCTGGGTTATCGGCTGGGATTCCCGCCTCCTCGCCGCCGTTTATACTGGCGTGATTTGTTCTGGACTTGCATATTATATACAAGGAGTCGTAATCCGGCAACGCGGCCCGGTTTTCGTTACATCTTTCACTCCTCTCTGTATGATCATCACCGCCGCTCTCGGTTCCATTGTCTTGGCCGAGCAAATCCACCTCGGAAGTGTAATTGGAGCCATTTTCATAGTGATGGGTCTCTACTTAGTTGTGTGGGGTAAAAGCAAAGACCATGTCATGAACTTGTCGGCGAACCCGAAAGGGGACGCCGGGCAATTACCGATCACCGCCGATCCAGAAACGAATGCTATTAAGAAAATCAATGAACATTCTGATATTTCCAAGGCATGA 1134 46.56 MGAESGFGMFCETMNKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHAVATLVISPFALVLERKIRPKMTFPILLRIMLLGFLEPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALIFRLESVNFKKIRSIAKVAGTVVTIGGAMVMTLYKGPIVDIIHGRGRSAAHQGSNSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICLTGMLEGTVVTFIMERDLSIWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRQRGPVFVTSFTPLCMIITAALGSIVLAEQIHLGSVIGAIFIVMGLYLVVWGKSKDHVMNLSANPKGDAGQLPITADPETNAIKKINEHSDISKA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5225712 5228281 + evm.model.ptg000002l.858 HCH12g0801 555648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0801 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 337 - -
HCH12g0801 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
HCH12g0801 377 PANTHER WAT1-RELATED PROTEIN 21 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH12g0801 377 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020(InterPro)
HCH12g0801 377 Pfam EamA-like transporter family 23 146 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0801 HCH-Chr12:5225712 HCH13g0120 HCH-Chr13:760102 7.00E-122 dispersed
HCH12g0801 HCH-Chr12:5225712 HCH13g0119 HCH-Chr13:752366 4.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0801 - - - 0.0