Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0811 ATGTCATCTTCTTTCTCTGGCGATGAAACTGCTCCTTTCTTCGGCTTCATCGGAGCCGCTGCAGCTCTCGTTTTCTCCTGCATGGGTGCAGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCTTCCATGGGGGTTATGCGACCTGAGCTCGTCATGAAATCTATAGTTCCGGTAGTTATGGCTGGAGTGTTGGGTATTTATGGGTTGATCATAGCCGTTATTATAAGTACTGGAATTAACCCAAGAACAAATCCTTATTATTTGTTTGATGGGTATGCTCATCTATCTTCTGGTCTTGCTTGTGGGCTTGCTGGTCTCTCTGCAGGAATGGCAATTGGGATTGTTGGCGATGCGGGTGTTCGGGCCAATGCACAACAGCCCAAGCTCTTTGTAGGAATGATTCTTATCCTCATCTTTGCCGAAGCCCTTGCCCTCTACGGTCTTATTGTCGGTATCATCCTCTCGTCTCGGGCAGGCCAATCTCGTGCAGACTAA 498 48.39 MSSSFSGDETAPFFGFIGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPRTNPYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5313892 5315530 + evm.model.ptg000002l.848 HCH12g0811 555658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0811 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
HCH12g0811 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
HCH12g0811 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
HCH12g0811 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
HCH12g0811 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
HCH12g0811 165 Gene3D - 11 162 IPR035921 -
HCH12g0811 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
HCH12g0811 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0811 HCH-Chr12:5313892 HCH4g0774 HCH-Chr4:4983942 1.20E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0811 K02155 - csv:101209326 281.182