Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0816 ATGGGGTTGAATAATAATGGACAACAGAGTTTTCATGTGTTGGCAGTGGATGATAATGTAATTGAGAGAAAGTTATTGGAGAGGCTTCTTACAAATTCTTCATATCAAGTGACTTGTGTGGAATCTGGAGATAAAGCTTTGAAATATTTAGGTCTGAATGATGATGACTCAGAAATAAGTCCTTCTTTTGCTGCTGCTGCTGAAGCATCCATTTCATCTTCATCCCCACACCAACAAAGATTGAAAGTCAACTTAATCATGACAGACTTTTCCATGCCGGGAATGAGCGGCTATGATTTACTTAAACGCCTCAAGAAATCATCTTGGAAAGATGTACCAGTTGTTGTCATGTCATCTGAAAATGAACCTTCAAGAATCAACATGTGTATGGAAGGAGGGGCTGAAGAATTCCTTTTGAAGCCTCTTCAATTATCAGATTTGAACAAGATTCAACCCCACCTTTTGAAATCCCTCCACTATTCCACAACAAACATTGCACAAGATTACAAGGGAAATAACAACCTCAAAATCAACAACAACATTGCTACCAAGAGGAAGGCTGTCTCTCCACAGCCTTCTCTCAGAAGATCCAAAATCAAAGAATTGACTCACTAA 615 38.54 MGLNNNGQQSFHVLAVDDNVIERKLLERLLTNSSYQVTCVESGDKALKYLGLNDDDSEISPSFAAAAEASISSSSPHQQRLKVNLIMTDFSMPGMSGYDLLKRLKKSSWKDVPVVVMSSENEPSRINMCMEGGAEEFLLKPLQLSDLNKIQPHLLKSLHYSTTNIAQDYKGNNNLKINNNIATKRKAVSPQPSLRRSKIKELTH 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5338825 5342207 + evm.model.ptg000002l.843 HCH12g0816 555663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0816 204 Gene3D - 12 192 - -
HCH12g0816 204 MobiDBLite consensus disorder prediction 184 204 - -
HCH12g0816 204 Pfam Response regulator receiver domain 79 149 IPR001789 GO:0000160(InterPro)
HCH12g0816 204 ProSiteProfiles Response regulatory domain profile. 12 155 IPR001789 GO:0000160(InterPro)
HCH12g0816 204 SMART REC_2 11 151 IPR001789 GO:0000160(InterPro)
HCH12g0816 204 SUPERFAMILY CheY-like 10 157 IPR011006 -
HCH12g0816 204 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 171 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0816 HCH-Chr12:5338825 HCH9g1007 HCH-Chr9:8043156 6.60E-42 dispersed
HCH12g0816 HCH-Chr12:5338825 HCH13g0137 HCH-Chr13:879166 3.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32704 PF00072 Response_reg 2.90E-19 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0816 K14492 - vvi:100259216 230.335