Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0822 ATGTCGGAGAATAATGCGTTGGATGCGGAGTCAGCGTCGGAGCTGGTTAAGGAACTGAAAGACAGTTTCTTCTCCGGCAAGACACGTAGCTACGAATGGAGAGTGTCGCAGATTAAAAGCCTTTTAAGGATTTGCGTTGACCATGAGAAAGATATTTGTGACGCTCTCTCCTCTGACTTGTCGAAGCCTGTCTTCGAATCCGTCCTTCATGAGGTAGTTATGTTAAAAAATTCATGTACATCAGCACTTAAAGAACTCAAACGTTGGATGACACCAGAGAAGGTTAAAACTTCCATGACTACATTTCCTTCATCTGCGGCAATTGTATCAGAACCATTGGGTGTTGCTTTGATCATTTCTGCCTGGAATTATCCATTCTTATTGTCTCTTGATCCAGTCGTTGGAGCAATAGCCGCTGGTAATGCTGTCGTTTTAAAGCCATCAGAAATTGCTCCTGCAACATCGTCTTTGATGGCAAAACTTCTTGGGAAATATTTGGATAACTCTTCTATAAAGGTTGTTGAGGGGGGTGTTTCTGAAACATCTGCCTTGCTGGATCAAAAGTGGGACAAAATATTTTACACAGGTAGTGCAAAAGTGGGGCGTGTAGTGATGGCGGCTGCTGCAAAGCACCTTACTCCGGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGGAATCAATTTGCAAGTTGCAACAAGGCGGATTATTGTTGGTAAGTGGGGTTGTAACAATGGACAAGCTTGCATTGCTCCTGATTACATCATAACTACTAAAGAATATGCTCCAAAGTTGGTGGAATCTCTGAAGCAAGAACTGGAGAAGTTTTATGGAAAGAATCAATTAGAATCTAAAGATTTGTCTCGCATTGTGAATGCCGACCACTTTGCTCGCTTGACAAAGCTCTTGGACGATGATAAAGTATCCAGCAACATTGTCCATGGAGGTGAAAGGGACAAAACCAACTTAAAGATGGCTCCCACCATCTTATTGGATGTCCCTCGAGACTCTCTGATTATGCAAGAGGAGATATTTGGTCCCCTGCTTCCCATTCTCACGGTTGACAAAGTGGAGGATAGCTTCGAAATAGTGAACTCAGGTACAAAGCCACTTGCTGCATATTTATTTACCAATAACAAGAAACTCAAAGAACAGTTCGTGGCTTGTATCTCTGCCGGGGGATTGGTTGTCAACGACACTACTTTACATCTTGCAGTTTCCACACTACCATTTGGAGGTGTTGGGGAGAGTGGAATGGGAGCTTACCATGGCAAGTTCTCTTTTGATGCTTTTAGCCATAAGAAAGCCGTCCTCTATCGAAGTTTCGCTGGCGACGCATCTCTGAGATACCCTCCATACTCAAAGGGGAAGTTGAGAGTAATGAAGGCCCTTTTTGGTGGTGGCATATTTGGAATAATTCGTGCTCTTTTTGGATGGTCTTAG 1455 43.23 MSENNALDAESASELVKELKDSFFSGKTRSYEWRVSQIKSLLRICVDHEKDICDALSSDLSKPVFESVLHEVVMLKNSCTSALKELKRWMTPEKVKTSMTTFPSSAAIVSEPLGVALIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPATSSLMAKLLGKYLDNSSIKVVEGGVSETSALLDQKWDKIFYTGSAKVGRVVMAAAAKHLTPVVLELGGKSPVVVDSGINLQVATRRIIVGKWGCNNGQACIAPDYIITTKEYAPKLVESLKQELEKFYGKNQLESKDLSRIVNADHFARLTKLLDDDKVSSNIVHGGERDKTNLKMAPTILLDVPRDSLIMQEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKKLKEQFVACISAGGLVVNDTTLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDASLRYPPYSKGKLRVMKALFGGGIFGIIRALFGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5371085 5375483 + evm.model.ptg000002l.837 HCH12g0822 555669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0822 484 CDD ALDH_F3FHI 12 443 - -
HCH12g0822 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
HCH12g0822 484 FunFam Aldehyde dehydrogenase 221 421 - -
HCH12g0822 484 FunFam Aldehyde dehydrogenase 20 225 - -
HCH12g0822 484 SUPERFAMILY ALDH-like 14 455 IPR016161 GO:0016491(InterPro)
HCH12g0822 484 Pfam Aldehyde dehydrogenase family 6 441 IPR015590 GO:0016491(InterPro)
HCH12g0822 484 PIRSF ALDH 1 474 IPR012394 GO:0006081(InterPro)
HCH12g0822 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
HCH12g0822 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
HCH12g0822 484 PANTHER ALDEHYDE DEHYDROGENASE 10 481 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0822 HCH-Chr12:5371085 HCH13g1378 HCH-Chr13:41696090 5.50E-127 dispersed
HCH12g0821 HCH-Chr12:5368270 HCH12g0822 HCH-Chr12:5371085 6.90E-14 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0822 K00128 - csv:101219569 778.089