Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0822 ATGTCGGAGAATAATGCGTTGGATGCGGAGTCAGCGTCGGAGCTGGTTAAGGAACTGAAAGACAGTTTCTTCTCCGGCAAGACACGTAGCTACGAATGGAGAGTGTCGCAGATTAAAAGCCTTTTAAGGATTTGCGTTGACCATGAGAAAGATATTTGTGACGCTCTCTCCTCTGACTTGTCGAAGCCTGTCTTCGAATCCGTCCTTCATGAGGTAGTTATGTTAAAAAATTCATGTACATCAGCACTTAAAGAACTCAAACGTTGGATGACACCAGAGAAGGTTAAAACTTCCATGACTACATTTCCTTCATCTGCGGCAATTGTATCAGAACCATTGGGTGTTGCTTTGATCATTTCTGCCTGGAATTATCCATTCTTATTGTCTCTTGATCCAGTCGTTGGAGCAATAGCCGCTGGTAATGCTGTCGTTTTAAAGCCATCAGAAATTGCTCCTGCAACATCGTCTTTGATGGCAAAACTTCTTGGGAAATATTTGGATAACTCTTCTATAAAGGTTGTTGAGGGGGGTGTTTCTGAAACATCTGCCTTGCTGGATCAAAAGTGGGACAAAATATTTTACACAGGTAGTGCAAAAGTGGGGCGTGTAGTGATGGCGGCTGCTGCAAAGCACCTTACTCCGGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCAGGAATCAATTTGCAAGTTGCAACAAGGCGGATTATTGTTGGTAAGTGGGGTTGTAACAATGGACAAGCTTGCATTGCTCCTGATTACATCATAACTACTAAAGAATATGCTCCAAAGTTGGTGGAATCTCTGAAGCAAGAACTGGAGAAGTTTTATGGAAAGAATCAATTAGAATCTAAAGATTTGTCTCGCATTGTGAATGCCGACCACTTTGCTCGCTTGACAAAGCTCTTGGACGATGATAAAGTATCCAGCAACATTGTCCATGGAGGTGAAAGGGACAAAACCAACTTAAAGATGGCTCCCACCATCTTATTGGATGTCCCTCGAGACTCTCTGATTATGCAAGAGGAGATATTTGGTCCCCTGCTTCCCATTCTCACGGTTGACAAAGTGGAGGATAGCTTCGAAATAGTGAACTCAGGTACAAAGCCACTTGCTGCATATTTATTTACCAATAACAAGAAACTCAAAGAACAGTTCGTGGCTTGTATCTCTGCCGGGGGATTGGTTGTCAACGACACTACTTTACATCTTGCAGTTTCCACACTACCATTTGGAGGTGTTGGGGAGAGTGGAATGGGAGCTTACCATGGCAAGTTCTCTTTTGATGCTTTTAGCCATAAGAAAGCCGTCCTCTATCGAAGTTTCGCTGGCGACGCATCTCTGAGATACCCTCCATACTCAAAGGGGAAGTTGAGAGTAATGAAGGCCCTTTTTGGTGGTGGCATATTTGGAATAATTCGTGCTCTTTTTGGATGGTCTTAG 1455 43.23 MSENNALDAESASELVKELKDSFFSGKTRSYEWRVSQIKSLLRICVDHEKDICDALSSDLSKPVFESVLHEVVMLKNSCTSALKELKRWMTPEKVKTSMTTFPSSAAIVSEPLGVALIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPATSSLMAKLLGKYLDNSSIKVVEGGVSETSALLDQKWDKIFYTGSAKVGRVVMAAAAKHLTPVVLELGGKSPVVVDSGINLQVATRRIIVGKWGCNNGQACIAPDYIITTKEYAPKLVESLKQELEKFYGKNQLESKDLSRIVNADHFARLTKLLDDDKVSSNIVHGGERDKTNLKMAPTILLDVPRDSLIMQEEIFGPLLPILTVDKVEDSFEIVNSGTKPLAAYLFTNNKKLKEQFVACISAGGLVVNDTTLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDASLRYPPYSKGKLRVMKALFGGGIFGIIRALFGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5371085 5375483 + evm.model.ptg000002l.837 HCH12g0822 555669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0822 484 CDD ALDH_F3FHI 12 443 - -
HCH12g0822 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620(InterPro)
HCH12g0822 484 FunFam Aldehyde dehydrogenase 221 421 - -
HCH12g0822 484 FunFam Aldehyde dehydrogenase 20 225 - -
HCH12g0822 484 SUPERFAMILY ALDH-like 14 455 IPR016161 GO:0016491(InterPro)
HCH12g0822 484 Pfam Aldehyde dehydrogenase family 6 441 IPR015590 GO:0016491(InterPro)
HCH12g0822 484 PIRSF ALDH 1 474 IPR012394 GO:0006081(InterPro)
HCH12g0822 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 21 439 IPR016162 GO:0016491(InterPro)
HCH12g0822 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491(InterPro)
HCH12g0822 484 PANTHER ALDEHYDE DEHYDROGENASE 10 481 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0822 K00128 - - csv:101219569 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0822 HCH-Chr12:5371085 HCH13g1378 HCH-Chr13:41696090 5.50E-127 dispersed
HCH12g0821 HCH-Chr12:5368270 HCH12g0822 HCH-Chr12:5371085 6.90E-14 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0766 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 5.5e-215 743.8
HCH8g1377 . 55 539 Aldehyde Dehydrogenase Gene Family AT3G24503 55.8 1.6e-158 556.2
HCH8g1376 . 60 544 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 1.1e-157 553.5
HCH4g0009 . 37 539 Aldehyde Dehydrogenase Gene Family AT3G24503 53.4 5.2e-157 551.2
HCH8g1377 . 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 80.7 1.6e-257 885.2
HCH8g1376 . 5 544 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 5.5e-253 870.2
HCH4g0009 . 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 74.2 2.3e-243 838.2
HCH8g0766 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 57.4 5.2e-171 597.8
HCH8g1377 . 5 383 Aldehyde Dehydrogenase Gene Family AT1G23800 75.3 3.5e-167 584.7
HCH4g0009 . 1 383 Aldehyde Dehydrogenase Gene Family AT1G23800 74.6 4.6e-167 584.3
HCH8g1376 . 5 388 Aldehyde Dehydrogenase Gene Family AT1G23800 70.9 9.2e-160 560.1
HCH8g0766 . 10 346 Aldehyde Dehydrogenase Gene Family AT1G23800 56.7 3.1e-107 385.6
HCH12g0822 . 10 484 Aldehyde Dehydrogenase Gene Family AT4G34240 65.5 2.3e-182 635.6
HCH12g0822 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 3.1e-179 624.8
HCH13g1378 . 63 477 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 2.1e-119 426.0
HCH13g1378 . 3 479 Aldehyde Dehydrogenase Gene Family AT4G36250 62.5 1.2e-182 636.3
HCH2g0957 . 26 530 Aldehyde Dehydrogenase Gene Family AT1G79440 76.4 5.1e-235 810.4
HCH7g0813 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.9 5.7e-235 810.4
HCH14g0436 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.3 4.6e-184 641.3
HCH8g1353 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.2 3.4e-249 857.4
HCH8g1353 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 3.2e-255 877.5
HCH10g0303 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.0 1.3e-267 918.7
HCH3g0274 . 18 554 Aldehyde Dehydrogenase Gene Family AT5G62530 79.7 1.3e-265 912.1
HCH6g1747 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.5 9.9e-280 959.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56