Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0832 ATGGCGCCATTGTTGCAGAGCTCTCAACCGTGGGTCGAGAAATATCGACCGAAGCAAGTGAAAGATGTTGCGCATCAGGATGAAGTAGTCCGTGTTCTCACTAATACACTCGAGACTTCTAATTGTCCTCATATGCTATTCTATGGCCCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCCATTGCTCATCAACTTTTCGGTCCTGAGCTTTACAAGTCCAGAGTTTTGGAGCTGAATGCTAGTGATGATCGTGGGATCAATGTTGTTCGGACCAAGATCAAAGATTTTGCTGCTGTTGCAGTAGGAACTGGCAAGCGTGAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTTTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCTCTGAGGCGTACCATGGAAACTTACTCAAAAGTCACAAGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTTTTGAGCAGCCGTGTATTGTACATCTGTAATGAAGAAGGTCTAAGTCTAGATGGAGAGGCTCTTTCTACGTTAAGTTCAATCTCACAAGGTGACCTACGTCGGGCCATCACGTACTTGCAGTCAGCAGCGCGTTTATTTGGATCATCAATTTCTTCCAAGGATCTGATTAGCGTGTCCAGTGTTATCCCTCAGGAGGTTGTTGACTCGCTATTTGCTGCATGTAAAAGTGGTAATTTTGATCTCGCGAACAAGGAAGTCAATAATGTGATTGCAGAGGGATATCCAGTGGCGCAGATGCTTACACAGTTATTTGAGGTGGTTGTTGAAGCCCATGATCTGCAAGATCTACAAAAGGCCAGGATATGTAAGAAGTTGGCTGAAGCAGATAAGTGTCTCATTGATGGCGCCGATGAATATTTGCAACTACTTGATGTGGTAAGTCAAACAATGCAAGCTTCGTGTAGTATGCAACACTAA 1011 44.41 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTGKREGGYPCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVLSSRVLYICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSSVIPQEVVDSLFAACKSGNFDLANKEVNNVIAEGYPVAQMLTQLFEVVVEAHDLQDLQKARICKKLAEADKCLIDGADEYLQLLDVVSQTMQASCSMQH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5424584 5428687 - evm.model.ptg000002l.827 HCH12g0832 555679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0832 336 CDD AAA 26 166 - -
HCH12g0832 336 FunFam Replication factor C subunit 4 176 239 - -
HCH12g0832 336 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
HCH12g0832 336 Gene3D - 3 173 IPR027417 -
HCH12g0832 336 Gene3D - 240 330 - -
HCH12g0832 336 FunFam Replication factor C subunit 5 3 174 - -
HCH12g0832 336 SMART AAA_5 41 174 IPR003593 GO:0016887(InterPro)
HCH12g0832 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH12g0832 336 Pfam RCF1/5-like, AAA+ ATPase lid domain 185 222 - -
HCH12g0832 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
HCH12g0832 336 FunFam Replication factor C subunit 4 240 329 - -
HCH12g0832 336 CDD HLD_clamp_RFC 174 233 IPR047854 -
HCH12g0832 336 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH12g0832 336 Gene3D - 175 239 - -
HCH12g0832 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 331 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0832 HCH-Chr12:5424584 HCH6g0944 HCH-Chr6:44225786 2.80E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0832 K10755 - csv:101221224 600.127