Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0835 ATGTCTGATCTCTTCCTCTTCTTCTTCTTCATCTTCTCCATCATTTCCTTCACTTCCTCTTCTCCATGTCCTATAAACCTTGATTACATCGAAACTTTCCCATGGGACACCACTTCCTGTCTTCAACAAAACAACAACAACCAATGCTGTCAAACGCTCCTCAGCCTCTTCGGCATCGGACTCGCCCAACACCTCAAAGAAACATCCTTCTTCCAACTCCCCGACCACACCACTTCCTCTTCTTGTCTCTCTCTCTTCCAAAAAAAACTAAACTCCATCTCCATTTCTCCATCTCTCATCCCTCACTGCTTTCAAGACCCTTCTCAGTTCGTAGCTAACTCATCTAGCTGTGCTGGAATTTTCACTACCCATGATTGGATTTCCAAGATTGGTGCAAAGACGCAGTTAGACATGTCTTGTAGTGGAGACTTGTCGGGTTTAACTCGGTGCGGGGCGTGCGCTGAGGCTGGCATGAAAGTCACTTCTCAGCTTGTGGGGTTAGATCAAAATGCTACCAGATGTTTTTATTTTTCTGTTTTATATGCTGCTGGGATTGTTAATGAATTTGGTCCAAAAGATAGTAGAGTTGTTTCTTGTATCTTGGGGTTGCCTTTATCTTCTTCTTCTAATAATGGAAGTAGAATGATCAAAATGAGTAGGAGAGATTTAGTGTTGGTGTTGAGTTTTAGCATTATGGGACTTTTTCTTTTTCTGTCTCTTTTTGTTATGCTACTTATTCATAGGAAAAGGATTGAGAAATCAATATCGAAACGGAAACAATACGATGGGACGACGTTATTGCCTAATTTTGGTGTGAAATGGTTCCATATAAATGAGCTTGAAAAAGCTACAAATGGATTTTCACAGAGAAATCTTATTGGTCAAGGAGCTTATGGGGTTGTTTATAAAGGTACTCTTTCAGATGGGACTTTGGTTGCTGTGAAGGAAATTGTTGATTTAGATTCAGATAGAGATGAAGATTTCACTAATGAGGTTGAGATTATTAGTAAAATACGACATAGAAATCTTCTTTCTCTTAGAGGCTGTTGTGTTATAAATGACAGCCATTTCAAAGACCAAAAGAGGAGGTTTTTTGTCTATGATTTTATGTCTAATGGTAATCTCAGTGATCATTTGTATTGTAAGGGTAGAAAAAAACCACTAACATGGCCACAAAGAAAGAATATAATTCTTGATGTAGCTAAAGGGTTAGCTTATCTACATCATGGAATCAAACCGGCGATCTATCATCGCGATATCAAGGCTACGAACATACTTCTCGACTCGGAAACTCGAGCTCGGATGGCGGATTTCGGGTTGGCGAAACAAAGTAGAGAAGGGCAGTCTCATCTAATCACTAGAGTTGCTGGAACTCATGGCTATTTGGCACCGGAATATGCTTTATACGGGCAGTTGACGGAGAAAAGCGATGTTTACAGTTTCGGTATTTTGATCCTAGAGATCATGAGTGGGAGGAAAGTGCTGGACACGACGGATTCGAGGGTGGTTCTGATCACAGATTGGGCTTGGATGCTGGTGAAATCAGGGGAAATGGAGAAGGTTTTTGATGGTGTGATTAGGGAAGAAGGAGTGAAAGGGGTGATGGAGAGATTTGTGCTTGTGGGGATGCTTTGTGCTCATGTAATGGTGAGTTTTAGGCCAACCATTGCTGAGGCAGTGAAGATGTTGGAAGGTGATATTGATATACCTACACTGCCTGATAGGCCTTTGCCTCTCAGTCATGAATCTTTCAAACTTTCTTTGCAATTTGATTCAAGATCTCGCCCATATTATACATGA 1800 40.94 MSDLFLFFFFIFSIISFTSSSPCPINLDYIETFPWDTTSCLQQNNNNQCCQTLLSLFGIGLAQHLKETSFFQLPDHTTSSSCLSLFQKKLNSISISPSLIPHCFQDPSQFVANSSSCAGIFTTHDWISKIGAKTQLDMSCSGDLSGLTRCGACAEAGMKVTSQLVGLDQNATRCFYFSVLYAAGIVNEFGPKDSRVVSCILGLPLSSSSNNGSRMIKMSRRDLVLVLSFSIMGLFLFLSLFVMLLIHRKRIEKSISKRKQYDGTTLLPNFGVKWFHINELEKATNGFSQRNLIGQGAYGVVYKGTLSDGTLVAVKEIVDLDSDRDEDFTNEVEIISKIRHRNLLSLRGCCVINDSHFKDQKRRFFVYDFMSNGNLSDHLYCKGRKKPLTWPQRKNIILDVAKGLAYLHHGIKPAIYHRDIKATNILLDSETRARMADFGLAKQSREGQSHLITRVAGTHGYLAPEYALYGQLTEKSDVYSFGILILEIMSGRKVLDTTDSRVVLITDWAWMLVKSGEMEKVFDGVIREEGVKGVMERFVLVGMLCAHVMVSFRPTIAEAVKMLEGDIDIPTLPDRPLPLSHESFKLSLQFDSRSRPYYT 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5452407 5454206 + evm.model.ptg000002l.824 HCH12g0835 555682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0835 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0835 599 FunFam Receptor-like serine/threonine-protein kinase At4g25390 253 369 - -
HCH12g0835 599 SMART serkin_6 287 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0835 599 CDD STKc_IRAK 293 565 - -
HCH12g0835 599 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
HCH12g0835 599 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 370 571 - -
HCH12g0835 599 PANTHER OS01G0750732 PROTEIN 35 570 IPR050885 -
HCH12g0835 599 ProSiteProfiles Protein kinase domain profile. 287 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0835 599 Pfam Protein kinase domain 289 500 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0835 599 Gene3D Phosphorylase Kinase; domain 1 249 369 - -
HCH12g0835 599 Pfam SPARK 19 175 IPR043891 -
HCH12g0835 599 SUPERFAMILY Protein kinase-like (PK-like) 271 581 IPR011009 -
HCH12g0835 599 Gene3D Transferase(Phosphotransferase) domain 1 370 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0850 HCH-Chr11:39332078 HCH12g0835 HCH-Chr12:5452407 1.70E-176 dispersed
HCH12g0835 HCH-Chr12:5452407 HCH7g1646 HCH-Chr7:48561545 1.00E-66 dispersed
HCH12g0835 HCH-Chr12:5452407 HCH4g0953 HCH-Chr4:6123489 7.50E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81120 PF00069 Pkinase 1.10E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0835 - - - 0.0