Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0839 | ATGATGATGAAGCCAAAGACCTTCACCGGAGCCAACGTCTTCGTGTCCCGAAATCTCGTCGCTCCAGAGATTTTCGACGCACTCCACGACGCTCTCAAGCAAAACGGCGCCGAAATCTTCCTCTGCTGCGATCCCTCTCGGAATGGCCCTAACGATTTTCACGTCATTTCCTCCTCCGATCACGAAAAGTTTGAAGATCTTCGAGCAAAGGGATGCAATTTGCTAGGTCCTCAGTGCGTACTTTCATGTGCGAAAGAGCACAGACCCCTTCCTAAACAGGGTTTTACATGTTGTCTTGCTATGGATGGTGTGAAAATTCTTGCGTCTGGTTTTCAGGCAGATGAGAAGGTTGAGGTAGGGAAGTTAGTGACTGCAATGGGAGGGGCATTGCATACGAAAGCATCTCTAGATGTCAGCTTTGTCGTTGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCTTTAAACATTTCAAAGAAACCAATAGTTACAATGGCTTGGTTAAAACAATGCTGGATTGAGCATCGTGTAGTGCCTCTGGAGGCATATCGAGTTCTTCCTTTTTCTGGATTGATTATATCTGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAGGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAGAAAGTGTACACATTTGATATCTCCTGAAGGCGACAAGTACAAGGTTGCGCGAACATGGGGTCATATTAGTATTGTTACTCGAAAATGGTTTGATCAATCCATTGCTAGAAGAGCATGTCTTAATGAGGAGTCATACCCTGTTGATAGTGTTTCTGTAACTTCAAATAAAATGGCAAGGGGTTTCACTCAGCATTGCCAAGAAAAGGTTATTGGGAATGTGCAAACTCCACCATCCTCATTTGCTGGCATTGCTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCAGGGATTGCAGATCTGGATTTAGAAGCTACTCTTTCACAGAATACATCTACATTTTCAGACGCTTCTCATTTTAGAAATGAGATTGATGTTGAAGTGCCAATTAAAATGTCAAAAAATGAAGCATCCACTGATAATTGTATTGCAAATGACTCTGAACCCGAAGACAATGACTTATATCTGTCAGCCTGTAGAATACTGGCTGTCGGGTTTGAAGCCCTCGAGATGCGCAGGATTGTCAATATGATTCGCAGTGGTGGAGGCTCCCGATATATGCTATTCAATGATAAGTTAACACACATAGTTGTTGGAAGTCCTTCAGAAATGGAGAAAAAGGAGGTAAGAGAAATTGCAGCCTCAGGTGTCATCCATGTGGTTAAAACCACCTGGCTTGAGGATTGTGAACGTCAAAAGAAGGAGATTCCTGTTCTTGATAGACATATGGCGTATGATGCTCTTATTCCTAAAGTATCCAGTAGAACAAGTATGTCTGTGCTGGATCAAAATAAAGTTTCTAATGTTTATCCAAGCAGGATACCTAATGAGTTAGAAGGAGGTATTCATGTTAGAACTGAAAATCCATCAGCAATGGAGGAAAAGATTGAAGAAAAAACTGAAGCCAATCTGAGCAGAGACAAAAATGTGAAATTGTCCCAGAAAAGCCAGCTTTTTGTTGCAAATGCTTCAAACAAGAGTCAAGAAAAGATGCGTCGAGATTCCACTTTTCAAAATGGGAAGTCGTCATGTGTGTTTAAGGGAAAAATATTTTGCTTTTCTAGTTCCTTCCAAGAAGATAGGAGAGGTGAAATTGTTGAATGGATAACTCAAGGGGGAGGGGAGGTTGTCGAGGATCATATGAAACAGAAAGTGCACTTCACTATTGAATGTCATGGTGTGACGCCAAGGTGTACAGATACTCAAACTACACATGTGTCCAGTCATTGGATCCGATCATGTTTAGAGGATGGATGCTTGTTGGATATCAGTGGGCACATTCTCTATTCTCCGCTCCCTTGTTCTATCCCTCTGTCTGGGTTTGAAAATATTCGATTTTGTGTTTCACAATATGAAGATAAAGATAGAGTATTGTTAAGAAATTTGTGTTTTGTACTGGGAGCTAAGTTTGTGGAGAAATTGACAAAGAAGGTTACCCATTTGATATGCAAGTTCTCGAATGGGCCAAAGTATGAGGCTGCATGTAAATGGGGAATACGTTCAATTACAGCTGAATGGATATACGAATGTGTCAGACAGAGTAAGATTCTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCAGGAGTATGCACTGCAACTCAGTTTCCTACACAAGCTGTTCGGATGATAGGTGGAGAAAGTCAATCCCAGTTCCCAAGTCAGTCTTCTGTGCAGAGAGATCGACCAGCTGGAACTAACAGTAGCTTTATAGGTGAGGTTGAACTATTAAGTTCTACGATTACTAATAAGAAGGCGAAGCTGCTTGAAGAACATATCCAAAAGCATCCACTTTTTTCTGGAAACAGCATCACTCATCCCGTCTGCAGTATGAACTCCACAAGAGATGATACATCAAAGTGTTCTGTGGGAACTTCAAATGTTCCTGATGTAGCTGCTGCGATTGAGGACTTGTTGGAGCAGACTAGTAAGATTCATGAGCAGGAGTCACCTGGAAGGACTGGCTGCGATAAAAGTATTTTTCCATCTGGCTGTTCCATCATTGGTCAAGACCATTCCGAAGCTCATCCAATTATTGGTTTATCTAACCAGTGGTTAAAAAGGACTGAGAGAAAAGAAAATACCAGCAACCCTACTGGAGAGGGTAGTGCAGGCATATTTGATGGTTTCAGTGAGACACAAACAGAGTCTCAGGTTGTGGGTTATGAAGAAGATTTATCGGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGAAGTAGCATGACTTGA | 2916 | 41.8 | MMMKPKTFTGANVFVSRNLVAPEIFDALHDALKQNGAEIFLCCDPSRNGPNDFHVISSSDHEKFEDLRAKGCNLLGPQCVLSCAKEHRPLPKQGFTCCLAMDGVKILASGFQADEKVEVGKLVTAMGGALHTKASLDVSFVVVKNVLAAKYKWALNISKKPIVTMAWLKQCWIEHRVVPLEAYRVLPFSGLIISVSRIPADERKEIERLILQNGGRYSADLTRKCTHLISPEGDKYKVARTWGHISIVTRKWFDQSIARRACLNEESYPVDSVSVTSNKMARGFTQHCQEKVIGNVQTPPSSFAGIAADSNFSAVSGPGIADLDLEATLSQNTSTFSDASHFRNEIDVEVPIKMSKNEASTDNCIANDSEPEDNDLYLSACRILAVGFEALEMRRIVNMIRSGGGSRYMLFNDKLTHIVVGSPSEMEKKEVREIAASGVIHVVKTTWLEDCERQKKEIPVLDRHMAYDALIPKVSSRTSMSVLDQNKVSNVYPSRIPNELEGGIHVRTENPSAMEEKIEEKTEANLSRDKNVKLSQKSQLFVANASNKSQEKMRRDSTFQNGKSSCVFKGKIFCFSSSFQEDRRGEIVEWITQGGGEVVEDHMKQKVHFTIECHGVTPRCTDTQTTHVSSHWIRSCLEDGCLLDISGHILYSPLPCSIPLSGFENIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSNGPKYEAACKWGIRSITAEWIYECVRQSKILSLDLYRPKEVTAQDREAGVCTATQFPTQAVRMIGGESQSQFPSQSSVQRDRPAGTNSSFIGEVELLSSTITNKKAKLLEEHIQKHPLFSGNSITHPVCSMNSTRDDTSKCSVGTSNVPDVAAAIEDLLEQTSKIHEQESPGRTGCDKSIFPSGCSIIGQDHSEAHPIIGLSNQWLKRTERKENTSNPTGEGSAGIFDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT | 971 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5490677 | 5498938 | - | evm.model.ptg000002l.820 | HCH12g0839 | 555686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0839 | 971 | SUPERFAMILY | BRCT domain | 567 | 652 | IPR036420 | - | |
HCH12g0839 | 971 | CDD | BRCT | 104 | 171 | - | - | |
HCH12g0839 | 971 | ProSiteProfiles | BRCT domain profile. | 563 | 650 | IPR001357 | - | |
HCH12g0839 | 971 | CDD | BRCT_TopBP1_rpt2_like | 187 | 260 | - | - | |
HCH12g0839 | 971 | ProSiteProfiles | BRCT domain profile. | 663 | 746 | IPR001357 | - | |
HCH12g0839 | 971 | MobiDBLite | consensus disorder prediction | 924 | 938 | - | - | |
HCH12g0839 | 971 | FunFam | Transcription coactivator | 37 | 95 | - | - | |
HCH12g0839 | 971 | CDD | BRCT_TopBP1_rpt2_like | 663 | 736 | - | - | |
HCH12g0839 | 971 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 24 | 969 | - | GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER) | |
HCH12g0839 | 971 | FunFam | Transcription coactivator | 355 | 465 | - | - | |
HCH12g0839 | 971 | FunFam | Transcription coactivator | 98 | 186 | - | - | |
HCH12g0839 | 971 | Pfam | BRCA1 C Terminus (BRCT) domain | 383 | 451 | IPR001357 | - | |
HCH12g0839 | 971 | ProSiteProfiles | BRCT domain profile. | 101 | 185 | IPR001357 | - | |
HCH12g0839 | 971 | Pfam | twin BRCT domain | 104 | 167 | IPR001357 | - | |
HCH12g0839 | 971 | Pfam | twin BRCT domain | 667 | 728 | IPR001357 | - | |
HCH12g0839 | 971 | Pfam | twin BRCT domain | 191 | 252 | IPR001357 | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 99 | 186 | IPR036420 | - | |
HCH12g0839 | 971 | SUPERFAMILY | BRCT domain | 59 | 185 | IPR036420 | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 560 | 656 | IPR036420 | - | |
HCH12g0839 | 971 | SUPERFAMILY | BRCT domain | 628 | 747 | IPR036420 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 565 | 640 | IPR001357 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 98 | 175 | IPR001357 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 185 | 260 | IPR001357 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 5 | 87 | IPR001357 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 660 | 736 | IPR001357 | - | |
HCH12g0839 | 971 | SMART | BRCT_7 | 375 | 455 | IPR001357 | - | |
HCH12g0839 | 971 | FunFam | Transcription coactivator | 560 | 656 | - | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 33 | 95 | IPR036420 | - | |
HCH12g0839 | 971 | SUPERFAMILY | BRCT domain | 187 | 271 | IPR036420 | - | |
HCH12g0839 | 971 | MobiDBLite | consensus disorder prediction | 778 | 797 | - | - | |
HCH12g0839 | 971 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 567 | 646 | IPR001357 | - | |
HCH12g0839 | 971 | MobiDBLite | consensus disorder prediction | 919 | 938 | - | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 660 | 753 | IPR036420 | - | |
HCH12g0839 | 971 | ProSiteProfiles | BRCT domain profile. | 373 | 465 | IPR001357 | - | |
HCH12g0839 | 971 | SUPERFAMILY | BRCT domain | 369 | 459 | IPR036420 | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 353 | 462 | IPR036420 | - | |
HCH12g0839 | 971 | ProSiteProfiles | BRCT domain profile. | 183 | 270 | IPR001357 | - | |
HCH12g0839 | 971 | Gene3D | BRCT domain | 187 | 271 | IPR036420 | - | |
HCH12g0839 | 971 | FunFam | DNA topoisomerase II binding protein 1 | 188 | 278 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0839 | K10728 | - | csv:101212525 | 1435.62 |