Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0839 ATGATGATGAAGCCAAAGACCTTCACCGGAGCCAACGTCTTCGTGTCCCGAAATCTCGTCGCTCCAGAGATTTTCGACGCACTCCACGACGCTCTCAAGCAAAACGGCGCCGAAATCTTCCTCTGCTGCGATCCCTCTCGGAATGGCCCTAACGATTTTCACGTCATTTCCTCCTCCGATCACGAAAAGTTTGAAGATCTTCGAGCAAAGGGATGCAATTTGCTAGGTCCTCAGTGCGTACTTTCATGTGCGAAAGAGCACAGACCCCTTCCTAAACAGGGTTTTACATGTTGTCTTGCTATGGATGGTGTGAAAATTCTTGCGTCTGGTTTTCAGGCAGATGAGAAGGTTGAGGTAGGGAAGTTAGTGACTGCAATGGGAGGGGCATTGCATACGAAAGCATCTCTAGATGTCAGCTTTGTCGTTGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCTTTAAACATTTCAAAGAAACCAATAGTTACAATGGCTTGGTTAAAACAATGCTGGATTGAGCATCGTGTAGTGCCTCTGGAGGCATATCGAGTTCTTCCTTTTTCTGGATTGATTATATCTGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAGGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAGAAAGTGTACACATTTGATATCTCCTGAAGGCGACAAGTACAAGGTTGCGCGAACATGGGGTCATATTAGTATTGTTACTCGAAAATGGTTTGATCAATCCATTGCTAGAAGAGCATGTCTTAATGAGGAGTCATACCCTGTTGATAGTGTTTCTGTAACTTCAAATAAAATGGCAAGGGGTTTCACTCAGCATTGCCAAGAAAAGGTTATTGGGAATGTGCAAACTCCACCATCCTCATTTGCTGGCATTGCTGCTGATTCAAATTTCTCAGCTGTTTCTGGCCCAGGGATTGCAGATCTGGATTTAGAAGCTACTCTTTCACAGAATACATCTACATTTTCAGACGCTTCTCATTTTAGAAATGAGATTGATGTTGAAGTGCCAATTAAAATGTCAAAAAATGAAGCATCCACTGATAATTGTATTGCAAATGACTCTGAACCCGAAGACAATGACTTATATCTGTCAGCCTGTAGAATACTGGCTGTCGGGTTTGAAGCCCTCGAGATGCGCAGGATTGTCAATATGATTCGCAGTGGTGGAGGCTCCCGATATATGCTATTCAATGATAAGTTAACACACATAGTTGTTGGAAGTCCTTCAGAAATGGAGAAAAAGGAGGTAAGAGAAATTGCAGCCTCAGGTGTCATCCATGTGGTTAAAACCACCTGGCTTGAGGATTGTGAACGTCAAAAGAAGGAGATTCCTGTTCTTGATAGACATATGGCGTATGATGCTCTTATTCCTAAAGTATCCAGTAGAACAAGTATGTCTGTGCTGGATCAAAATAAAGTTTCTAATGTTTATCCAAGCAGGATACCTAATGAGTTAGAAGGAGGTATTCATGTTAGAACTGAAAATCCATCAGCAATGGAGGAAAAGATTGAAGAAAAAACTGAAGCCAATCTGAGCAGAGACAAAAATGTGAAATTGTCCCAGAAAAGCCAGCTTTTTGTTGCAAATGCTTCAAACAAGAGTCAAGAAAAGATGCGTCGAGATTCCACTTTTCAAAATGGGAAGTCGTCATGTGTGTTTAAGGGAAAAATATTTTGCTTTTCTAGTTCCTTCCAAGAAGATAGGAGAGGTGAAATTGTTGAATGGATAACTCAAGGGGGAGGGGAGGTTGTCGAGGATCATATGAAACAGAAAGTGCACTTCACTATTGAATGTCATGGTGTGACGCCAAGGTGTACAGATACTCAAACTACACATGTGTCCAGTCATTGGATCCGATCATGTTTAGAGGATGGATGCTTGTTGGATATCAGTGGGCACATTCTCTATTCTCCGCTCCCTTGTTCTATCCCTCTGTCTGGGTTTGAAAATATTCGATTTTGTGTTTCACAATATGAAGATAAAGATAGAGTATTGTTAAGAAATTTGTGTTTTGTACTGGGAGCTAAGTTTGTGGAGAAATTGACAAAGAAGGTTACCCATTTGATATGCAAGTTCTCGAATGGGCCAAAGTATGAGGCTGCATGTAAATGGGGAATACGTTCAATTACAGCTGAATGGATATACGAATGTGTCAGACAGAGTAAGATTCTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCAGGAGTATGCACTGCAACTCAGTTTCCTACACAAGCTGTTCGGATGATAGGTGGAGAAAGTCAATCCCAGTTCCCAAGTCAGTCTTCTGTGCAGAGAGATCGACCAGCTGGAACTAACAGTAGCTTTATAGGTGAGGTTGAACTATTAAGTTCTACGATTACTAATAAGAAGGCGAAGCTGCTTGAAGAACATATCCAAAAGCATCCACTTTTTTCTGGAAACAGCATCACTCATCCCGTCTGCAGTATGAACTCCACAAGAGATGATACATCAAAGTGTTCTGTGGGAACTTCAAATGTTCCTGATGTAGCTGCTGCGATTGAGGACTTGTTGGAGCAGACTAGTAAGATTCATGAGCAGGAGTCACCTGGAAGGACTGGCTGCGATAAAAGTATTTTTCCATCTGGCTGTTCCATCATTGGTCAAGACCATTCCGAAGCTCATCCAATTATTGGTTTATCTAACCAGTGGTTAAAAAGGACTGAGAGAAAAGAAAATACCAGCAACCCTACTGGAGAGGGTAGTGCAGGCATATTTGATGGTTTCAGTGAGACACAAACAGAGTCTCAGGTTGTGGGTTATGAAGAAGATTTATCGGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGAAGTAGCATGACTTGA 2916 41.8 MMMKPKTFTGANVFVSRNLVAPEIFDALHDALKQNGAEIFLCCDPSRNGPNDFHVISSSDHEKFEDLRAKGCNLLGPQCVLSCAKEHRPLPKQGFTCCLAMDGVKILASGFQADEKVEVGKLVTAMGGALHTKASLDVSFVVVKNVLAAKYKWALNISKKPIVTMAWLKQCWIEHRVVPLEAYRVLPFSGLIISVSRIPADERKEIERLILQNGGRYSADLTRKCTHLISPEGDKYKVARTWGHISIVTRKWFDQSIARRACLNEESYPVDSVSVTSNKMARGFTQHCQEKVIGNVQTPPSSFAGIAADSNFSAVSGPGIADLDLEATLSQNTSTFSDASHFRNEIDVEVPIKMSKNEASTDNCIANDSEPEDNDLYLSACRILAVGFEALEMRRIVNMIRSGGGSRYMLFNDKLTHIVVGSPSEMEKKEVREIAASGVIHVVKTTWLEDCERQKKEIPVLDRHMAYDALIPKVSSRTSMSVLDQNKVSNVYPSRIPNELEGGIHVRTENPSAMEEKIEEKTEANLSRDKNVKLSQKSQLFVANASNKSQEKMRRDSTFQNGKSSCVFKGKIFCFSSSFQEDRRGEIVEWITQGGGEVVEDHMKQKVHFTIECHGVTPRCTDTQTTHVSSHWIRSCLEDGCLLDISGHILYSPLPCSIPLSGFENIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSNGPKYEAACKWGIRSITAEWIYECVRQSKILSLDLYRPKEVTAQDREAGVCTATQFPTQAVRMIGGESQSQFPSQSSVQRDRPAGTNSSFIGEVELLSSTITNKKAKLLEEHIQKHPLFSGNSITHPVCSMNSTRDDTSKCSVGTSNVPDVAAAIEDLLEQTSKIHEQESPGRTGCDKSIFPSGCSIIGQDHSEAHPIIGLSNQWLKRTERKENTSNPTGEGSAGIFDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5490677 5498938 - evm.model.ptg000002l.820 HCH12g0839 555686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0839 971 SUPERFAMILY BRCT domain 567 652 IPR036420 -
HCH12g0839 971 CDD BRCT 104 171 - -
HCH12g0839 971 ProSiteProfiles BRCT domain profile. 563 650 IPR001357 -
HCH12g0839 971 CDD BRCT_TopBP1_rpt2_like 187 260 - -
HCH12g0839 971 ProSiteProfiles BRCT domain profile. 663 746 IPR001357 -
HCH12g0839 971 MobiDBLite consensus disorder prediction 924 938 - -
HCH12g0839 971 FunFam Transcription coactivator 37 95 - -
HCH12g0839 971 CDD BRCT_TopBP1_rpt2_like 663 736 - -
HCH12g0839 971 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 24 969 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
HCH12g0839 971 FunFam Transcription coactivator 355 465 - -
HCH12g0839 971 FunFam Transcription coactivator 98 186 - -
HCH12g0839 971 Pfam BRCA1 C Terminus (BRCT) domain 383 451 IPR001357 -
HCH12g0839 971 ProSiteProfiles BRCT domain profile. 101 185 IPR001357 -
HCH12g0839 971 Pfam twin BRCT domain 104 167 IPR001357 -
HCH12g0839 971 Pfam twin BRCT domain 667 728 IPR001357 -
HCH12g0839 971 Pfam twin BRCT domain 191 252 IPR001357 -
HCH12g0839 971 Gene3D BRCT domain 99 186 IPR036420 -
HCH12g0839 971 SUPERFAMILY BRCT domain 59 185 IPR036420 -
HCH12g0839 971 Gene3D BRCT domain 560 656 IPR036420 -
HCH12g0839 971 SUPERFAMILY BRCT domain 628 747 IPR036420 -
HCH12g0839 971 SMART BRCT_7 565 640 IPR001357 -
HCH12g0839 971 SMART BRCT_7 98 175 IPR001357 -
HCH12g0839 971 SMART BRCT_7 185 260 IPR001357 -
HCH12g0839 971 SMART BRCT_7 5 87 IPR001357 -
HCH12g0839 971 SMART BRCT_7 660 736 IPR001357 -
HCH12g0839 971 SMART BRCT_7 375 455 IPR001357 -
HCH12g0839 971 FunFam Transcription coactivator 560 656 - -
HCH12g0839 971 Gene3D BRCT domain 33 95 IPR036420 -
HCH12g0839 971 SUPERFAMILY BRCT domain 187 271 IPR036420 -
HCH12g0839 971 MobiDBLite consensus disorder prediction 778 797 - -
HCH12g0839 971 Pfam BRCT domain, a BRCA1 C-terminus domain 567 646 IPR001357 -
HCH12g0839 971 MobiDBLite consensus disorder prediction 919 938 - -
HCH12g0839 971 Gene3D BRCT domain 660 753 IPR036420 -
HCH12g0839 971 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
HCH12g0839 971 SUPERFAMILY BRCT domain 369 459 IPR036420 -
HCH12g0839 971 Gene3D BRCT domain 353 462 IPR036420 -
HCH12g0839 971 ProSiteProfiles BRCT domain profile. 183 270 IPR001357 -
HCH12g0839 971 Gene3D BRCT domain 187 271 IPR036420 -
HCH12g0839 971 FunFam DNA topoisomerase II binding protein 1 188 278 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0839 K10728 - csv:101212525 1435.62