Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0841 ATGGGAAGAGGGAAGATTGAGATTAAGAGAATTGAAAACTCAAGTAACAGACAAGTGACATATTCAAAGAGAAGAAATGGGATCATCAAGAAAGCTAAAGAGATCACTGTTTTATGTGATGCTCAAGTTTCTCTTGTTATCTTTGCTAGCTCTGGAAAGATGCATGAATATTGCAGTCCTTCTACACCGTTGGTTGATATCTTGGATAAATATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAGTTAGATAGAATCAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCACTTGAGGGGGGAGGACATAACATCTCTAAACTACAAGGAACTCATGTCTCTTGAAGATGCTCTTGAAAATGGCCTCACTGGAGTTCGTGAGAAGCAATTGGAGTTTATGAAAATGATGAGGACAAATGAAAAAATGTTGGAGGAGGAGAATAAACGCCTCAACTATGAACTGTATCAAAAGGAGATGGTAGCGATGGGAGATAGTGTGAGAGAGATGGACAATGGATACAATCAGAGAATGAGAGACTTCAACTCTCAGATGCCTTTTGCATTTCGTGTGCAGCCTATTCAGCCAAATCTACAAGAAAGGATCTAA 636 39.78 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLVDILDKYHKQSGKRLWDAKHENLSNELDRIKKENDNMQIELRHLRGEDITSLNYKELMSLEDALENGLTGVREKQLEFMKMMRTNEKMLEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5505297 5507852 + evm.model.ptg000002l.818 HCH12g0841 555688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0841 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 Coils Coil 77 111 - -
HCH12g0841 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH12g0841 211 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 Coils Coil 143 163 - -
HCH12g0841 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g0841 211 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g0841 211 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0841 211 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0158 HCH-Chr12:834271 HCH12g0841 HCH-Chr12:5505297 2.00E-34 dispersed
HCH12g0841 HCH-Chr12:5505297 HCH2g0180 HCH-Chr2:16213618 4.00E-34 dispersed
HCH12g0841 HCH-Chr12:5505297 HCH2g0227 HCH-Chr2:30884941 8.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32706 PF01486 K-box 1.10E-18 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0841 K09264 - csv:101222239 409.453