Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0843 ATGGCGGCGGATGGAGGCGGCGGCGCGTTGGTAACCGGCGCCGGAGATGCAATGAAGGCACACGCGGCTATGGCTTTGATACAGCTGATCAATGGAGGATACCATGTTATTACGAAAGTAGCCCTGAATGTTGGAATGAATCAGCTGGTGTTTTGTTTATTCCGTGACTTGTTAGCGCTAGCGATTCTTGCCCCTGTCGCTTACGTCCGGGAGAAGCGGGTTCGTTTGCCTATGACTCGGAACCTCCTCATATCTTTCTTCATTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTGTTTCTTGTTGGACTTGGTTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCAATTCCAGTTTTCACATTCCTGTTTGCTGTTATGATGGGCACAGAGACTGTGAACTTTCTCAAATTGGAAGGGCAGGCAAAGGTTGGAGGTACACTCGTTTGTGTCTCTGGTGCCATTTTGATGGTTTTATTCCGTGGTCCGGCTTTGATTGGAAAAAATGAAGATGATTTTACCTTGCATAGTGAAATAAGTGCTCGGGGTCAACCGGAGCCTGCTGGATGGTTAATGTCTAACTTTCTTGAGTATGGCTTGGATCATTTTCACGTTGGAGTTTTGTGCTTGATAGGGAATTGTATGTGCATGGCTGCTTTCTTGGCCATCCAGGCACCTGTATTAAAGAAGTATCCTGCCAACTTATCAGTCACAGCATATTCTTATTTCTTTGGTGCTATGTTAATGATGATCACGTCATTCTTTATGACTAACGATTCCACAGACTGGAATCTGACGCAATCAGAGTTTTTTGCAGTCCTTTATGCTGGAATTTTTGCATCTGCCCTCAATTATGGGCTTCTGACATGGTCCAATAAAATATTGGGGCCTTCGTTAGTTGCTCTGTACAATCCACTTCAACCTGCAGCTTCTGCCTTGTTATCAAGAGTTTTCCTTGGAAGCCCTATTTATCTTGGAAGTGTTATAGGGGGATCTCTAATAATTGCTGGTCTTTATTTGGTGACCTGGGCATCACATCGTGAACGACAATCAACTTTGGTTTTGTTACCTCATTCAACAAGGTCTTCTGAACCACTTATTCTAAAAGATTCATTGACTAACAAGCTTGCATATCAGATAGGACACATTTTCTCAGGGTCGTCCTCATCACCAAAATCTGTAGATTAG 1197 43.78 MAADGGGGALVTGAGDAMKAHAAMALIQLINGGYHVITKVALNVGMNQLVFCLFRDLLALAILAPVAYVREKRVRLPMTRNLLISFFILGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNFLKLEGQAKVGGTLVCVSGAILMVLFRGPALIGKNEDDFTLHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQAPVLKKYPANLSVTAYSYFFGAMLMMITSFFMTNDSTDWNLTQSEFFAVLYAGIFASALNYGLLTWSNKILGPSLVALYNPLQPAASALLSRVFLGSPIYLGSVIGGSLIIAGLYLVTWASHRERQSTLVLLPHSTRSSEPLILKDSLTNKLAYQIGHIFSGSSSSPKSVD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5513195 5517974 - evm.model.ptg000002l.816 HCH12g0843 555690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0843 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 351 - -
HCH12g0843 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 163 - -
HCH12g0843 398 PANTHER WAT1-RELATED PROTEIN 22 356 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH12g0843 398 Pfam EamA-like transporter family 22 143 IPR000620 GO:0016020(InterPro)
HCH12g0843 398 Pfam EamA-like transporter family 209 345 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0843 HCH-Chr12:5513195 HCH4g0763 HCH-Chr4:4901402 2.30E-59 dispersed
HCH12g0843 HCH-Chr12:5513195 HCH12g0160 HCH-Chr12:855011 9.50E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0843 - - - 0.0