Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0914 ATGGATGTGGTAGGGAGTCAACCCATGGAGTCTGAAGAATATGATGATGGAGTGGTAGTCAGAGAAGTCCGTGCGAATGGGATCTGTATAAAAACGGCGGAAGTAGAAGCCAAGCTTGACGAGGGAAATATTCAAGAGGCGGAATCTTCATTGCGGGAAGGGTTGTCTCTCAATTTTGAGGAAGCAAGAGCCCTTCTCGGAAAGTTAGAGTATCAAAGAGGCAATGTAGAAGGTGCTCTACGTGTGTTTGAAGGCATTGATCTCCAAGCTGCTATTCAGCGATTACAGCCTTGCCTTACTGAAAAATTACCTTCAAAAAAGGGCCGCCCTCGCCCTGAATCTCAACATGCAGTTTCACAGCATGCTGCTAATCTAGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGTTAGGGAGAGTAACAGAGTCTGCTCATGAGTGTACAAGTGTGCTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGAGACAGTCAGTCAGGCTGTGGAACTTCTTCCAGAGCTTTGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATTTCTGCCTATAGGCGTGCACTCTTAAGCCAGTGGAATCTCGATAATGACAGCTGTTCAAGGATACAGAAAGGATTTGCTCTGTTTTTGCTGTACACTGGTGTTGAGGCTGGCCCTCCTAGTTTAGCTGTTCAAGTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATCTTTCCTTGGTAGGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCTTTATGCAGCCAAACTTCTGTCTTGGCAAAGCAACTTGAAGAGATCATGCCTGGAGTCTATCAACGTGTTGACCGTTGGAAGTCTTTAGCTCTTTGTTATAGTGCAGCGGGACAGAATAAAGTTGCCTTGAATCTTCTGAGAAAGTCTCTACATAAACATGAGCAACCAGATGATGTGTTGGCCTTATTATTGGCAGCCAAGATCTGCAGTGAGGATCCTTATCTCGCTGCTGAAGGAGTTGGATATGCCCAGCGAGCTATGAGCAATTCAGTAGGAATTGATGAGCATCTAAAAGGTGTGGGTCTTCGTTTGTTTGGTCTTTGTTTGGGAAAACAAGCCAAAGTTTCTTCCTCTGACTTCGAGAGGTCCCGTCTTCAATCAGAGGCATTGAAATCTCTTGAGGCAGCAACTGCTTTGGAGAGCAATAACTCAGATTTGATTCTTGAATTGGGAGTGCAATATTCAGAATATCGGAATTTGAATGCCGCTCTGCAATATGCAAAGAAGTTCATTGATGAAACTGGTGGCTCCATCGTAAAAGGCTGGCGGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGCGGTTTTCAGAGGCTGAAGTGGTCGCTGATGCTGCTTTGGATGAGACTACAAAATGGGAACAGGGACCACTTCTTAGACTCAAGGCAAGGTTGAAGATCTCTCAGTCATTACATATGGATGCTATTGAAACTTACCGTTACCTCCTTGCATTAGTTCAAGCCCAAAGGAAATCCTTTGGGCCTCTCAGAGCTGTTACTCAGGTTGAGGATGATAAAGTGAATGAGTTTGAAGTTTGGAATGGTCTTGCAAATTTATACTCTAGCCTCTCACATTGGAAAGATGCAGAGATATGTTTGGGAAAAGCCAGAGAACTGAAAGAGTACTCCCCAGAAGTACTGCTTACTGAAGGTCTAATGTCTGAAGGACGTGGGCAAATCCAAGAAGCTCTGGGCGCTTATATTAATGCTCTTCTACTCGAACCATCTTATGTTCCTTGCAAGGTATTGATTGGTGCCTTGTGTTCAAAAGCGGGCCCAAATTCATTGCCTATAGCAAGAAGCTTACTTTCGGACGCATTGAGACTAGATCCGACCAACCGTAAGGCTTGGTTTTACTTGGGAAGGATTCATAGAGATGAAGGACGAACAGCTGATGCTATAGACTGCTTCCAGGCAGCTGCCATGCTTGAAGAATCGGACCCCATTGAAAGTTTCAGCAGTGTTCTCTAG 2112 44.13 MDVVGSQPMESEEYDDGVVVREVRANGICIKTAEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFEGIDLQAAIQRLQPCLTEKLPSKKGRPRPESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTESAHECTSVLDAVEKIFHQGIPDGQVDSRLQETVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLDNDSCSRIQKGFALFLLYTGVEAGPPSLAVQVEGSYVPKNNLEEAILLLMVLVKKSFLGRIKWDPSVMEHLIFALSLCSQTSVLAKQLEEIMPGVYQRVDRWKSLALCYSAAGQNKVALNLLRKSLHKHEQPDDVLALLLAAKICSEDPYLAAEGVGYAQRAMSNSVGIDEHLKGVGLRLFGLCLGKQAKVSSSDFERSRLQSEALKSLEAATALESNNSDLILELGVQYSEYRNLNAALQYAKKFIDETGGSIVKGWRLLALVLSAQKRFSEAEVVADAALDETTKWEQGPLLRLKARLKISQSLHMDAIETYRYLLALVQAQRKSFGPLRAVTQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEYSPEVLLTEGLMSEGRGQIQEALGAYINALLLEPSYVPCKVLIGALCSKAGPNSLPIARSLLSDALRLDPTNRKAWFYLGRIHRDEGRTADAIDCFQAAAMLEESDPIESFSSVL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6178190 6181390 - evm.model.ptg000002l.745 HCH12g0914 555761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0914 703 Gene3D Tetratricopeptide repeat domain 521 696 IPR011990 GO:0005515(InterPro)
HCH12g0914 703 Pfam Tetratricopeptide repeat 33 85 - -
HCH12g0914 703 Pfam Tetratricopeptide repeat 644 688 - -
HCH12g0914 703 Gene3D Tetratricopeptide repeat domain 251 502 IPR011990 GO:0005515(InterPro)
HCH12g0914 703 SUPERFAMILY TPR-like 128 354 IPR011990 GO:0005515(InterPro)
HCH12g0914 703 Gene3D Tetratricopeptide repeat domain 30 211 IPR011990 GO:0005515(InterPro)
HCH12g0914 703 ProSiteProfiles TPR repeat profile. 661 694 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 PANTHER PROTEIN NPG1 26 700 IPR043376 -
HCH12g0914 703 SUPERFAMILY TPR-like 506 691 IPR011990 GO:0005515(InterPro)
HCH12g0914 703 SMART tpr_5 661 694 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 SMART tpr_5 591 624 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 SMART tpr_5 467 500 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 SMART tpr_5 557 590 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 SMART tpr_5 311 344 IPR019734 GO:0005515(InterPro)
HCH12g0914 703 FunFam NPG1 548 697 - -
HCH12g0914 703 SUPERFAMILY TPR-like 39 486 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0914 HCH-Chr12:6178190 HCH5g0114 HCH-Chr5:704421 4.90E-161 dispersed
HCH12g0914 HCH-Chr12:6178190 HCH7g1352 HCH-Chr7:46367125 3.10E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0914 K21843 - csv:101206641 1232.24