Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0921 ATGATAATGGAGATGTTTAAATGCTATCTCCTTCACATCTTTGTTGCTTTAGCTATTTCAATTATGGTTGGTGCACAGGATCAATCAGGCTTCATTAGCATTGACTGTGGAATTTCAAAGAATTCAAGCTACACAGACCAAGTAACGGGCATAAAGTACATCTCTGATGTGAACTTCATAGAAACTGGTATAAGCAATAGCATATCATCTGATTTCAATACAACCACTCTTCCACAGCAATTTCAGTACGTCAGAAGCTTTCCGGAAGGAGATAGAAACTGTTACATCATAAAGCCTGCTCTAGGTAAAGGTTATAAGTATCTGATCAGAGCAAGTTTCATGTATGGAAACTATGACGGAGAAGGTAAAGCACCGATTTTTTATCTGTATGTTGGAATTAATAAGTGGGATTCGATAATATCGAACAATGAATCGAGTATCATAATCAAAGAAGCTATACATGCACCTCCTACATCTTCTATATACATATGTCTAGTGAATACTGGCTTTGGGACACCATTTATATCAGCATTGGAGCTCAGGCTTTTGAAAAATTCTACTTACGTGACTGGTTCTGAATCCTTAGCACTCTATAAGCGGTATAACAATGATTTTTGCGATCGGATTTGGACGCCCTTCAACTTTCCTGCGTACAAAGTAATAAGTACTTCATCCACAGTTGATTCAGTAAATAGCAACAGTTATAATTTACCAAGAATTGTAATGAGCACTGCTGCCACACCTAATAATGCCATTAGTCCTTTTAATTTTCATTGGATTCCTGAAGATCCCAGTGCCGAATATCATATGTACATGCACTTTGCTGATCTTGAAAAACCCCAAGCCAACCAGTCCAGGGAATTTAACATCCTTCTGGATGGGAATTTTCTTTATGGACCGGTTTCTCCTGATTACTTGTATTCAACTACAGTGTTTAGTGGTTTGCCAATGAGCGGAGAGAGAATAGATATCACATTACTCAAAACTAACAAGTCAAATCTTCCACCTATCCTCAATGCTCTTGAAGTTTATAGGGTGCTAGATACATCACAATCACGAACCGATGAGCAAGATATTACGGCTCTTATAAACATCAAATCATTGTATAAAGTGAGAAAGAACTGGCAGGGAGATCCGTGCATACCGAAATCCTTATTGTGGCATGCGCTTAATTGTAGTTATGATGGTCAAAATCCAAACAGAATCACCTCCTTGAACTTATCTTCAAACGGATTGACGGGGGGAATAGCTAATTACATATCTGAACTCACGTCATTACAGTATCTGGATTTATCATACAATAACTTGACTGGACCAGTGCCCGGTTTTCTATCTGAATTGTCCTCCTTGAAACTCATAGACTTGAGGAACAATAACCTCCTTGGTTCAATTCCCGATGAAATCATGGAAAGATCCAAGAATGGATCACTTTCAATAAGTTTTGGAGGAAATCCAAATCTTTGTGCTTCATCTTCTTGCCAAAAAAAGAAGAAAAGGACCATTATTCCAATTGTAGCAGCAATAATTTCATCAGTACTGGTCCTTTCAGCTGCAAGTGCAGCAATAGTCTGGATCATAAAATGGAGAAAACGAGCCCGACAACAACCCACCATTAGACTTGGGTCAGTGGACTCGAAGAAAGAGCAGATATCGTATTCCGAAATACAGCGTATTACAAATGACTTTGAGAAAAAAATTGGAGAAGGAGCTTTTGCAGAGGTTTTCCTTGGTTTCTTATATGACACTCAAGTTGCTGTGAAGGTCCTTAAGCCTTCAGTTCAAGGGTATAAAGAATTTGAGACAGAAGTTAAACTTTTGCTGAGAATTCATCATAGAAACTTGACTAGCCTTATTGGATATTGCTATGAAAACACCAATATGGTTCTTATCTACGAGTACATAAATAATGGCAACTTAAAAGAACATCTATCAGGTAAGATTGCTGGTATCCTCAGTTGGGAGGACCGGATGCAAATAGCGGTGGATGCAGCACAAGGATTGGAGTATCTGCATCATGGTTGTAAGCCACCAATTGTTCATAGAGACGTGAAGTCTGCAAACATCCTTTTGACTCAAAAATTTCAAGCCAAAATAGCTGATTTTGGTCTATCTAAGAGTTTTCCAACTGAAAGTCATACTCATTTGACAACAGTCGTTGCGGGTACCCCTGGTTATCTCGATCCTGAGTATTACCAGTCAAGTTGGTTGAAGGAGAAAAGTGATGTTTATAGTTTTGGATCCGTTATATTAGAGCTAATCACATCTCGTCCTGTCATCGAAATCGAAGAAACCCGTTCGGAGAATTTCCATATCCAATGGGTCATGCACTTCATTGAAACAGGTGACATAGAGAGCATTGTTGATAAGAGGTTAAGAGGAAACTTTGACATAAGTTCTGCATGGAAGGCTGTGGAGATTGCTATGACATGTTTGTCACAAACTTCCATTGAAAGGCCAAGCATGAAGAAGGTGGTGATGGAGTTGAATGAGTGTTTGGTGTTAGAGAAAGATCGGAAACGAAAAAACGTCCATTCTTATACTCGATGTTCAAATGCAGTTGGCAGGAATTTCAGTGTTTAA 2580 38.68 MIMEMFKCYLLHIFVALAISIMVGAQDQSGFISIDCGISKNSSYTDQVTGIKYISDVNFIETGISNSISSDFNTTTLPQQFQYVRSFPEGDRNCYIIKPALGKGYKYLIRASFMYGNYDGEGKAPIFYLYVGINKWDSIISNNESSIIIKEAIHAPPTSSIYICLVNTGFGTPFISALELRLLKNSTYVTGSESLALYKRYNNDFCDRIWTPFNFPAYKVISTSSTVDSVNSNSYNLPRIVMSTAATPNNAISPFNFHWIPEDPSAEYHMYMHFADLEKPQANQSREFNILLDGNFLYGPVSPDYLYSTTVFSGLPMSGERIDITLLKTNKSNLPPILNALEVYRVLDTSQSRTDEQDITALINIKSLYKVRKNWQGDPCIPKSLLWHALNCSYDGQNPNRITSLNLSSNGLTGGIANYISELTSLQYLDLSYNNLTGPVPGFLSELSSLKLIDLRNNNLLGSIPDEIMERSKNGSLSISFGGNPNLCASSSCQKKKKRTIIPIVAAIISSVLVLSAASAAIVWIIKWRKRARQQPTIRLGSVDSKKEQISYSEIQRITNDFEKKIGEGAFAEVFLGFLYDTQVAVKVLKPSVQGYKEFETEVKLLLRIHHRNLTSLIGYCYENTNMVLIYEYINNGNLKEHLSGKIAGILSWEDRMQIAVDAAQGLEYLHHGCKPPIVHRDVKSANILLTQKFQAKIADFGLSKSFPTESHTHLTTVVAGTPGYLDPEYYQSSWLKEKSDVYSFGSVILELITSRPVIEIEETRSENFHIQWVMHFIETGDIESIVDKRLRGNFDISSAWKAVEIAMTCLSQTSIERPSMKKVVMELNECLVLEKDRKRKNVHSYTRCSNAVGRNFSV 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6251150 6261160 + evm.model.ptg000002l.738 HCH12g0921 555768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0921 859 SMART serkin_6 560 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0921 859 Gene3D Phosphorylase Kinase; domain 1 523 633 - -
HCH12g0921 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0921 859 SUPERFAMILY Protein kinase-like (PK-like) 545 828 IPR011009 -
HCH12g0921 859 Pfam Malectin-like domain 34 346 IPR024788 -
HCH12g0921 859 FunFam Leucine-rich repeat receptor-like kinase 357 490 - -
HCH12g0921 859 Gene3D Transferase(Phosphotransferase) domain 1 634 854 - -
HCH12g0921 859 ProSiteProfiles Protein kinase domain profile. 560 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0921 859 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 634 841 - -
HCH12g0921 859 Pfam Protein kinase domain 563 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0921 859 SUPERFAMILY L domain-like 356 487 - -
HCH12g0921 859 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515(InterPro)
HCH12g0921 859 ProSitePatterns Protein kinases ATP-binding region signature. 566 587 IPR017441 GO:0005524(InterPro)
HCH12g0921 859 PANTHER OS07G0107800 PROTEIN-RELATED 26 836 - -
HCH12g0921 859 Gene3D Ribonuclease Inhibitor 357 481 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0921 HCH-Chr12:6251150 HCH4g1454 HCH-Chr4:10801984 6.80E-205 dispersed
HCH12g0921 HCH-Chr12:6251150 HCH6g0130 HCH-Chr6:1605133 2.70E-201 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81121 PF12819 Malectin_like 8.60E-103 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0921 - - - 0.0