Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0959 ATGGAAGTAACCGCTTCGATTTCAGTTTCCGTTCAATTGGGTTTGGTATTGCTTCTAATAATATGGGGATGGAAAGTTATAAACTGGATTTGGGTGAGGCCAAAGAGGCTTGAAAAGTACTTGAGAAATCAAGGCCTCGCCGGAAATTCTTATCGTCTTCTCTTTGGAGATTTTAAGGATATAGCAACTGCTATGCGCCGAGCTAAATCACTTCCGATGGATTTCTCTCATGATATTGCTCCACGCGTCACCCCTTCCTCTCATATAACCATTCACAAATACGGTAAGGATTCTTTTACATGGCTTGGCACAACTCCAAGAGTTTACATAACAGAGCCTGAACAATTGAAGTCTGTCTTCTCTCTTACAAATGACGTTCGTAAGATGTCTTCGTTTGCCGTTGCAAGGAGATTGGGAAGGGGACTCGTCTCCCTCGAGGGAAGTAAATGGGCTAGACATAGAAAGATCATCAACCCTGCATTTCATTCGGAGAAGTTGAAGGATATGTTTCCAGCATTTGCTAAGAGTTGTGGCGAGATGATTGACAAATGGGAAAGCATGGTCTCTACAGAAGGGTCTCGTGACTTAGATGTGTGGCCGGATTTGCAAAATATGACGGCGGATGTGATTTCTCGTACTGCATTTGGAAGTAATTTTGAAGAAGGAAAAAGGATTTTCCAACTCCTGAAGGAGTTGGCTCCACTTTTGATGACAGTACTAACGAAGAGAGTCTATCTTATTCCAGGATGGAGATTTATACCAACCAAGTTCAATAGGCGGCTAGGGAAAATTGATGACGAAACACGAGCTCTGGTTTTGGGTATTATAAGGAAAAGGCAAAGTTCTATGAAGGCAGGTGAAACGTTCAATGATGATCTATTAGGAACTCTTTTGGAATCCAACTTAAATCAAATTAGAGAACAAGGAAACAACAAAGATGTTGGAATGAATATTGACGATGTAATTAATGAATGTAAGCTTTTCTATTTTGCTGGCCAAGAAACCACAGCAGCATTACTTGTCTGGACAATGGTTTTACTTGGCCGGCACTTGGAATGGCAAGATCAAGCTAGAGCAGAAGTGCTTGAGGTTTTTGGGAACGGAAAATTGGATTTTGATGGTTTAAGTCGTCTAAAAGTTGTGACTATGATACTAAACGAGGTTCTCAGGCTATACCCTCCGGTTGGTATGTTATCTCGAGCAATTCATAAGGAAACAAAACTTGGGAACCTGTCATTACCATCAGGAGTGACCATTGGTGTGCCGTTAATTGGCATTCACAAAGATCCTCTGATGTGGGGTGAAGATGCACACGAGTTTAAACCGGAACGATTTTCAGAAGGAGTTTCAAAAGCAACAAAGAATCAAGTCTGTTTCATCCCTTTCGGATGGGGTCCTCGAATCTGCGTTGGTCAAAACTTTGCTATGATTGAAGCAAAAATTGCACTATCCATGATTTTGCAACGGTTCGCTTTTGAGCTTTCTCCTTATTACTCTCATGCTCCTACTTCAAATATCACTATTCAACCTCAACATGGAGCTCACCTCATCCTTCGTAAGTTGTAA 1566 41.38 MEVTASISVSVQLGLVLLLIIWGWKVINWIWVRPKRLEKYLRNQGLAGNSYRLLFGDFKDIATAMRRAKSLPMDFSHDIAPRVTPSSHITIHKYGKDSFTWLGTTPRVYITEPEQLKSVFSLTNDVRKMSSFAVARRLGRGLVSLEGSKWARHRKIINPAFHSEKLKDMFPAFAKSCGEMIDKWESMVSTEGSRDLDVWPDLQNMTADVISRTAFGSNFEEGKRIFQLLKELAPLLMTVLTKRVYLIPGWRFIPTKFNRRLGKIDDETRALVLGIIRKRQSSMKAGETFNDDLLGTLLESNLNQIREQGNNKDVGMNIDDVINECKLFYFAGQETTAALLVWTMVLLGRHLEWQDQARAEVLEVFGNGKLDFDGLSRLKVVTMILNEVLRLYPPVGMLSRAIHKETKLGNLSLPSGVTIGVPLIGIHKDPLMWGEDAHEFKPERFSEGVSKATKNQVCFIPFGWGPRICVGQNFAMIEAKIALSMILQRFAFELSPYYSHAPTSNITIQPQHGAHLILRKL 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 6640430 6643287 + evm.model.ptg000002l.700 HCH12g0959 555806
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0959 521 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PANTHER CYTOCHROME P450 FAMILY MEMBER 15 514 IPR050665 GO:0004497(PANTHER)
HCH12g0959 521 SUPERFAMILY Cytochrome P450 91 519 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 Gene3D Cytochrome P450 84 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0959 521 FunFam Cytochrome P450 734A1 31 521 - -
HCH12g0959 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH12g0959 521 CDD CYP72 85 517 - -
HCH12g0959 521 Pfam Cytochrome P450 93 497 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0959 HCH-Chr12:6640430 HCH12g0961 HCH-Chr12:6693469 1.20E-281 dispersed
HCH12g0959 HCH-Chr12:6640430 HCH12g0960 HCH-Chr12:6648557 6.30E-113 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0959 - - - 0.0