Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0973 ATGATTTTAAACGAGGTTCTAAGGTTATATCCACCGATTGGAATGTTTGAGCGTAGAGTTGAAAAGGAAACAAGAGTTGGAAATTTTATTTTACCAAGTGGAGTGATATTAGGTTTCCCAATTCTTCTTATCCATCAAGATCGTGAATTATGGGGTGAGGACGCAAATGAGTTTAAACCAGAGAGATTTTCTGAAGGAGTTTCTAATGCAACAAAGGATCAAACCTCCTTCTTTCCATTTGGATGGGGTCCTCGAATATGCATAGGGCAGAATTTTGCGATGATTGAAGCAAAAGTGGCAATGACAATTATTCTACAACGCTTCTCGTTTGAGCTTTCATCATCTTATACTCATGCTCCTGTCTCCTTATTTATGACTACGAAGCCACAACATGGAGCTCATATCATCCTACATAAATTGTAA 423 37.83 MILNEVLRLYPPIGMFERRVEKETRVGNFILPSGVILGFPILLIHQDRELWGEDANEFKPERFSEGVSNATKDQTSFFPFGWGPRICIGQNFAMIEAKVAMTIILQRFSFELSSSYTHAPVSLFMTTKPQHGAHIILHKL 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6990153 6990575 + evm.model.ptg000002l.686 HCH12g0973 555820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0973 140 SUPERFAMILY Cytochrome P450 1 138 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 80 89 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH12g0973 140 Gene3D Cytochrome P450 1 140 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 Pfam Cytochrome P450 1 114 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS E-class P450 group I signature 41 65 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS E-class P450 group I signature 87 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS E-class P450 group I signature 77 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS P450 superfamily signature 1 11 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS P450 superfamily signature 87 98 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PRINTS P450 superfamily signature 78 87 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0973 140 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 132 IPR050665 GO:0004497(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0973 HCH-Chr12:6990153 HCH8g0612 HCH-Chr8:42926925 8.60E-49 dispersed
HCH12g0973 HCH-Chr12:6990153 HCH12g0974 HCH-Chr12:7005974 2.00E-61 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0973 - - - 0.0