Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0982 ATGGATTCCCATTCCCATTTCTTACCTCCCCTCAAAAGATTCAGAACCCTTCAACAGCAAGAAGATAATAAATCATTAGATCCATTTTCTCTTCCTGCAAAAAAGCGAAAAGAATCTCGTGATTCGTCACCCTCCCTTTCCGTTGCCCCTCTCTGCTTGCCCACCAAAAAAAGAATACATGCTTTTCAACCCGATTTTGAATTGGATCTCAATTTAGAATATAACCCTTCTCTTGAAGATAAATCAATTCAATCCATTAAACCTAGCCCACAAGTAAAATTAGAAGTAGAAGAAGAAGATGGAATTGTTTGTGCCATTTGTCAAAGCACGGATGGGGACCCTTCCGATCCGATCGTGTTTTGCGATGGATGCGATTTAATGGTCCATGCTTCTTGTTATGGTAATCCTCTTGTACAGTCCATACCAGATGGAGATTGGTTTTGTGCCCAATGCTGTACTGATAATAAGATTGCAAAAACTACGTTTTCGTGCTGCCTTTGCTCTATCGAAGGCGGAGCAATGAAGCCAACGACCGATGGTCGATGGGCGCATATTGTGTGTGGTCTTTTTGTTCCTGAGGTCTTCTTTGAGGATTCAGATGGAAGAGAAGGAATTGATTGTTCTAAGGTTCCTGAAAGGAGGTGGAAATTGAGATGTTATATTTGTAAAAGTTTATGTGGGTGTTGTATTGATTGTTCAGAGATTAAGTGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGCATTGAATATAATCAAGGGAGGAAATCAGGTGCCATTGTTGCTGGGTTCTGTAAAAACCATACTGCTTTGTGGGAGAAGCAACAATTAACAGGAAAGTTCAAGATTGTAGCCAGAGATGAAGAGAAGCTGTAG 888 40.54 MDSHSHFLPPLKRFRTLQQQEDNKSLDPFSLPAKKRKESRDSSPSLSVAPLCLPTKKRIHAFQPDFELDLNLEYNPSLEDKSIQSIKPSPQVKLEVEEEDGIVCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVQSIPDGDWFCAQCCTDNKIAKTTFSCCLCSIEGGAMKPTTDGRWAHIVCGLFVPEVFFEDSDGREGIDCSKVPERRWKLRCYICKSLCGCCIDCSEIKCSLAFHVTCGLKEDLCIEYNQGRKSGAIVAGFCKNHTALWEKQQLTGKFKIVARDEEKL 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7123363 7124761 - evm.model.ptg000002l.677 HCH12g0982 555829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0982 295 MobiDBLite consensus disorder prediction 28 42 - -
HCH12g0982 295 ProSiteProfiles Extended PHD (ePHD) domain profile. 161 273 IPR034732 -
HCH12g0982 295 SMART PHD_3 218 273 IPR001965 -
HCH12g0982 295 SMART PHD_3 103 152 IPR001965 -
HCH12g0982 295 Pfam PHD-finger 104 151 IPR019787 -
HCH12g0982 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 274 IPR013083 -
HCH12g0982 295 SUPERFAMILY FYVE/PHD zinc finger 95 161 IPR011011 -
HCH12g0982 295 ProSiteProfiles Zinc finger PHD-type profile. 101 154 IPR019787 -
HCH12g0982 295 MobiDBLite consensus disorder prediction 1 47 - -
HCH12g0982 295 Pfam PHD-zinc-finger like domain 163 261 - -
HCH12g0982 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 158 IPR013083 -
HCH12g0982 295 PANTHER PHD FINGER PROTEINS 73 273 IPR050701 GO:0006357(PANTHER)
HCH12g0982 295 CDD PHD_BRPF_JADE_like 103 151 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32714 PF13832 zf-HC5HC2H_2 3.70E-28 CL0390 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0982 K11380 - csv:101203744 435.261