Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0986 ATGCCTGGGAATAAGTATAACGGTAATTCAAACGGTATTCCAGACCATATTCCAAATAGAGTGGAAAGGCTATTGAGAGATAGAAAGCTAAGGAGAAGCAGCAAGGATTCATATTCGAATGAGGTAAATGAATACAGTAGTAGGGATCTGTCTGAAATAATTGAGAATGACCTTCGTTTGAAAGAAGAAGGAAACAATGGCATTTCCTGTAAATTTTTGGAAAATTCTGTAGCCACTGAAGGATGTGAAAAGCAAGATGGCAAGCCGCTTAGACAACGGTTACTGGTTGTGGCTAATAGGCTGCCTGTCTCCGCTGTTAGGAGAGGTGAAGATTCTTGGTCTCTTGAGATTAGTGCAGGGGGTTTAGTGAGTGCTCTTCTCGGTGTGAAGGAATTTGAGGCAAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGATAGGACAAAAGGCACTCACTGAAGCTTTGGCTGAGAAGAGGTGTATCCCTGTCTTCCTTGATGAAGAGATTGTTCATCAGTACTACAATGGTTACTGCAACAACATCTTATGGCCTTTATTTCATTACCTTGGCCTTCCGCAAGAAGATCGGCTTGCCACCACCCGTAGTTTTCAGTCTCAGTTTGCTGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTGGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGTCTTAAAGATCATAACAGTAAGATGAAGGTCGGCTGGTTTCTCCATACTCCTTTTCCTTCTTCTGAAATCCACAGGACCCTCCCATCTAGATCAGAGCTACTGCGTTCAGTACTTGCTGCTGATTTGGTTGGTTTTCACACTTACGACTATGCTCGTCATTTCGTTAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCTGAAGGCGTTGAGGATCAAGGGAAGCTGACAAGAGTTGCTGCATTTCCTATTGGAATAGACTCGGATCGATTCATACGTGCACTTAAGATTCTCGAAGTCCAAACTCATATCAAAGAGTTGAAGGAAAGATTTAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATACTGGCATTTGAAAAGTTCTTAGAAGAAAATCCTGATTGGCGTGACAAAGTTGTTCTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTACTGTTCCAATACATCATCTGGATCGTTCACTTGATTTTCATGCATTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTCTGAGGGATGGAATGAATCTTGTCAGCTACGAGTTTGTTGCATGCCAAGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCACAATCTCTCGGTGCTGGAGCACTTCTGGTCAACCCCTGGAACATAACAGAAGTTGCAAAATCAATTGAACAAGCGTTAAATATGAGTGCTGAAGATAGAGAAAAGCGACATAAGCATAATTTTCACCATGTGACGACACACACTGCCCAGGAATGGGCAGAAACATTTGTAAGTGAACTTAATGATACTGTTGTCGAAGCTGAACTGAGGATAAGACAATTTCGACCCTTACTTCCATTTGATGATGCGATTTCACATTATCGACAATCTACTAATCGGTTACTCATACTGGGGTTCAATGCTGCATTGACTGAACCAGGGGACACCCTGGAGAGAAGAGGTGATCAGATTAAAGAAATGGAACTGAAATTACACCCAGAATTGAAAGAACCCTTGGCCGCGATTTGCAACGACCCAAATACAACAGTAGTCATCCTCAGTGGGAGTGACAGAGCTGCCTTGGATGATAACTTTGAGGAGTTTGATATGTGGTTGGCGGCTGAGAATGGAATGTTTCTACGCTTTACTCGGGGAGATTGGATGACTACGATGCCTGAACATTTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTATTTCACCGAGAGGACTCCTCGTTCCCATTTAGAACTCCGTGAAACTTCACTTATTTGGAACTATAAATATGCAGATTGTGACTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATCTGTGGACAGGTCCGATTTCTAATGCATCAGTTGATGTTGTTCAAGGTACCCGATCCGTTGAGGTGCGAGCTGTCGGGGTTACCAAGGGTTCAGCAATTGACCGAATATTGGGAGAGATAGTTCACAGCAAGTCCATGACGACTCCCATAGACTATGTCTTGTGTATAGGGCATTTTCTTGGGAAGGATGAAGATGTGTACACCTTCTTTGAGCCTGAGCTTCCATCAGATACCATAGGTATGGCAAGAAGCAAGGGAACTGATGGACTTAAGTCAACTGGTGAGAGATCTTCGTTAAAAATTCCACCGAAATCTCCTCACTACAAGTCACGGTCGAATTCCGAGAAGAAAACTACAAATCATAACTGTGCAAATGGTCGTAAACCATCGCCGGAGAAGATTCAATGGAATGTACTTGATCTTAAGGCGGAGAACTACTTTTCGTGTGCCGTTGGACGGAATCGAACGAATGCTCGGTATCAACTTGGATCATCAGATGATGTTGTCTCATTCCTTAAAAAAATGGCAAGTGCCAATGCTTCTGGTTGA 2763 42.6 MPGNKYNGNSNGIPDHIPNRVERLLRDRKLRRSSKDSYSNEVNEYSSRDLSEIIENDLRLKEEGNNGISCKFLENSVATEGCEKQDGKPLRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKILEVQTHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIEQALNMSAEDREKRHKHNFHHVTTHTAQEWAETFVSELNDTVVEAELRIRQFRPLLPFDDAISHYRQSTNRLLILGFNAALTEPGDTLERRGDQIKEMELKLHPELKEPLAAICNDPNTTVVILSGSDRAALDDNFEEFDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHLELRETSLIWNYKYADCDFGRLQARDMLQHLWTGPISNASVDVVQGTRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKSTGERSSLKIPPKSPHYKSRSNSEKKTTNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRNRTNARYQLGSSDDVVSFLKKMASANASG 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7151140 7160884 - evm.model.ptg000002l.673 HCH12g0986 555833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0986 920 Gene3D Glycogen Phosphorylase B; 85 339 - -
HCH12g0986 920 CDD GT20_TPS 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 340 542 - -
HCH12g0986 920 Gene3D Glycogen Phosphorylase B; 340 542 - -
HCH12g0986 920 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 93 558 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 CDD HAD_TPP 591 811 - -
HCH12g0986 920 MobiDBLite consensus disorder prediction 818 869 - -
HCH12g0986 920 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 81 915 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH12g0986 920 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 683 763 - -
HCH12g0986 920 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 85 339 - -
HCH12g0986 920 FunFam Alpha,alpha-trehalose-phosphate synthase 617 688 - -
HCH12g0986 920 Gene3D - 617 777 IPR023214 -
HCH12g0986 920 Gene3D - 683 763 - -
HCH12g0986 920 FunFam Trehalose-6-phosphatase synthase S4 729 843 - -
HCH12g0986 920 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 92 561 - -
HCH12g0986 920 Pfam Trehalose-phosphatase 615 838 IPR003337 GO:0005992(InterPro)
HCH12g0986 920 Pfam Glycosyltransferase family 20 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 SUPERFAMILY HAD-like 618 914 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0986 K16055 - - csv:101204478 1657.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0986 HCH-Chr12:7151140 HCH6g1128 HCH-Chr6:45863708 1.30E-124 dispersed
HCH12g0986 HCH-Chr12:7151140 HCH3g0746 HCH-Chr3:5405414 0.00E+00 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH12g0986 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 78.6 0.0e+00 1468.8
HCH3g0746 . 29 953 Trehalose Biosynthesis Gene Families AT1G78580 73.5 0.0e+00 1372.1
HCH3g0746 . 115 723 Trehalose Biosynthesis Gene Families AT1G16980 64.8 4.4e-244 840.9
HCH12g0986 . 83 694 Trehalose Biosynthesis Gene Families AT1G16980 65.3 8.3e-243 836.6
HCH12g0986 . 91 612 Trehalose Biosynthesis Gene Families AT1G17000 62.1 1.3e-191 666.8
HCH3g0746 . 120 638 Trehalose Biosynthesis Gene Families AT1G17000 61.5 5.1e-191 664.8
HCH12g0986 . 91 917 Trehalose Biosynthesis Gene Families AT4G27550 63.2 4.0e-305 1043.9
HCH3g0746 . 119 951 Trehalose Biosynthesis Gene Families AT4G27550 59.2 3.9e-292 1000.7
HCH6g1128 . 1 836 Trehalose Biosynthesis Gene Families AT4G17770 81.2 0.0e+00 1397.5
HCH1g0188 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 71.0 0.0e+00 1252.7
HCH14g1006 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.4 0.0e+00 1182.2
HCH7g0126 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.3 0.0e+00 1161.4
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1134.8
HCH8g1373 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 62.9 0.0e+00 1115.1
HCH1g0188 . 1 845 Trehalose Biosynthesis Gene Families AT1G68020 80.7 0.0e+00 1411.0
HCH6g1128 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 71.6 0.0e+00 1275.8
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1155.6
HCH7g0126 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1137.9
HCH1g1015 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1114.8
HCH8g1373 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1106.3
HCH7g0126 . 1 853 Trehalose Biosynthesis Gene Families AT1G06410 76.7 0.0e+00 1372.8
HCH14g1006 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1360.5
HCH6g1128 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1144.0
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT1G06410 63.8 0.0e+00 1115.1
HCH1g1015 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.4 0.0e+00 1083.6
HCH8g1373 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.5e-308 1054.7
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G70290 67.9 0.0e+00 1192.6
HCH8g1373 . 1 857 Trehalose Biosynthesis Gene Families AT1G70290 61.7 0.0e+00 1099.0
HCH14g1006 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 4.4e-294 1007.3
HCH7g0126 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 57.0 5.3e-292 1000.3
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.5 4.5e-291 997.3
HCH6g1128 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 56.5 2.2e-285 978.4
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 74.6 0.0e+00 1349.7
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1223.4
HCH1g0188 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 62.7 0.0e+00 1116.3
HCH14g1006 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.7 0.0e+00 1111.3
HCH6g1128 . 1 839 Trehalose Biosynthesis Gene Families AT1G23870 62.8 0.0e+00 1101.7
HCH7g0126 . 1 854 Trehalose Biosynthesis Gene Families AT1G23870 60.1 0.0e+00 1096.6
HCH1g1015 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 73.9 0.0e+00 1343.6
HCH8g1373 . 1 860 Trehalose Biosynthesis Gene Families AT1G60140 65.9 0.0e+00 1211.4
HCH14g1006 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
HCH1g0188 . 1 849 Trehalose Biosynthesis Gene Families AT1G60140 61.9 0.0e+00 1082.4
HCH6g1128 . 1 838 Trehalose Biosynthesis Gene Families AT1G60140 60.2 1.3e-312 1068.9
HCH7g0126 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.2 1.6e-310 1062.0
HCH1g1015 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.7 3.9e-309 1057.4
HCH6g1128 . 26 839 Trehalose Biosynthesis Gene Families AT2G18700 60.5 1.5e-300 1028.9
HCH8g1373 . 10 842 Trehalose Biosynthesis Gene Families AT2G18700 58.9 8.9e-298 1019.6
HCH14g1006 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.7 1.2e-297 1019.2
HCH7g0126 . 24 841 Trehalose Biosynthesis Gene Families AT2G18700 58.3 2.7e-294 1008.1
HCH1g0188 . 1 840 Trehalose Biosynthesis Gene Families AT2G18700 58.0 1.5e-289 992.3
HCH5g0652 . 29 583 Trehalose Biosynthesis Gene Families AT4G24040 57.3 7.4e-193 670.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001443 2 5 3 3 2 1 2 2 1 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 1 2 2 6 6 1 71