Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0986 ATGCCTGGGAATAAGTATAACGGTAATTCAAACGGTATTCCAGACCATATTCCAAATAGAGTGGAAAGGCTATTGAGAGATAGAAAGCTAAGGAGAAGCAGCAAGGATTCATATTCGAATGAGGTAAATGAATACAGTAGTAGGGATCTGTCTGAAATAATTGAGAATGACCTTCGTTTGAAAGAAGAAGGAAACAATGGCATTTCCTGTAAATTTTTGGAAAATTCTGTAGCCACTGAAGGATGTGAAAAGCAAGATGGCAAGCCGCTTAGACAACGGTTACTGGTTGTGGCTAATAGGCTGCCTGTCTCCGCTGTTAGGAGAGGTGAAGATTCTTGGTCTCTTGAGATTAGTGCAGGGGGTTTAGTGAGTGCTCTTCTCGGTGTGAAGGAATTTGAGGCAAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGATAGGACAAAAGGCACTCACTGAAGCTTTGGCTGAGAAGAGGTGTATCCCTGTCTTCCTTGATGAAGAGATTGTTCATCAGTACTACAATGGTTACTGCAACAACATCTTATGGCCTTTATTTCATTACCTTGGCCTTCCGCAAGAAGATCGGCTTGCCACCACCCGTAGTTTTCAGTCTCAGTTTGCTGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTGGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGTCTTAAAGATCATAACAGTAAGATGAAGGTCGGCTGGTTTCTCCATACTCCTTTTCCTTCTTCTGAAATCCACAGGACCCTCCCATCTAGATCAGAGCTACTGCGTTCAGTACTTGCTGCTGATTTGGTTGGTTTTCACACTTACGACTATGCTCGTCATTTCGTTAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCTGAAGGCGTTGAGGATCAAGGGAAGCTGACAAGAGTTGCTGCATTTCCTATTGGAATAGACTCGGATCGATTCATACGTGCACTTAAGATTCTCGAAGTCCAAACTCATATCAAAGAGTTGAAGGAAAGATTTAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATACTGGCATTTGAAAAGTTCTTAGAAGAAAATCCTGATTGGCGTGACAAAGTTGTTCTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTACTGTTCCAATACATCATCTGGATCGTTCACTTGATTTTCATGCATTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTCTGAGGGATGGAATGAATCTTGTCAGCTACGAGTTTGTTGCATGCCAAGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCACAATCTCTCGGTGCTGGAGCACTTCTGGTCAACCCCTGGAACATAACAGAAGTTGCAAAATCAATTGAACAAGCGTTAAATATGAGTGCTGAAGATAGAGAAAAGCGACATAAGCATAATTTTCACCATGTGACGACACACACTGCCCAGGAATGGGCAGAAACATTTGTAAGTGAACTTAATGATACTGTTGTCGAAGCTGAACTGAGGATAAGACAATTTCGACCCTTACTTCCATTTGATGATGCGATTTCACATTATCGACAATCTACTAATCGGTTACTCATACTGGGGTTCAATGCTGCATTGACTGAACCAGGGGACACCCTGGAGAGAAGAGGTGATCAGATTAAAGAAATGGAACTGAAATTACACCCAGAATTGAAAGAACCCTTGGCCGCGATTTGCAACGACCCAAATACAACAGTAGTCATCCTCAGTGGGAGTGACAGAGCTGCCTTGGATGATAACTTTGAGGAGTTTGATATGTGGTTGGCGGCTGAGAATGGAATGTTTCTACGCTTTACTCGGGGAGATTGGATGACTACGATGCCTGAACATTTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTATTTCACCGAGAGGACTCCTCGTTCCCATTTAGAACTCCGTGAAACTTCACTTATTTGGAACTATAAATATGCAGATTGTGACTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATCTGTGGACAGGTCCGATTTCTAATGCATCAGTTGATGTTGTTCAAGGTACCCGATCCGTTGAGGTGCGAGCTGTCGGGGTTACCAAGGGTTCAGCAATTGACCGAATATTGGGAGAGATAGTTCACAGCAAGTCCATGACGACTCCCATAGACTATGTCTTGTGTATAGGGCATTTTCTTGGGAAGGATGAAGATGTGTACACCTTCTTTGAGCCTGAGCTTCCATCAGATACCATAGGTATGGCAAGAAGCAAGGGAACTGATGGACTTAAGTCAACTGGTGAGAGATCTTCGTTAAAAATTCCACCGAAATCTCCTCACTACAAGTCACGGTCGAATTCCGAGAAGAAAACTACAAATCATAACTGTGCAAATGGTCGTAAACCATCGCCGGAGAAGATTCAATGGAATGTACTTGATCTTAAGGCGGAGAACTACTTTTCGTGTGCCGTTGGACGGAATCGAACGAATGCTCGGTATCAACTTGGATCATCAGATGATGTTGTCTCATTCCTTAAAAAAATGGCAAGTGCCAATGCTTCTGGTTGA 2763 42.6 MPGNKYNGNSNGIPDHIPNRVERLLRDRKLRRSSKDSYSNEVNEYSSRDLSEIIENDLRLKEEGNNGISCKFLENSVATEGCEKQDGKPLRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKILEVQTHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIEQALNMSAEDREKRHKHNFHHVTTHTAQEWAETFVSELNDTVVEAELRIRQFRPLLPFDDAISHYRQSTNRLLILGFNAALTEPGDTLERRGDQIKEMELKLHPELKEPLAAICNDPNTTVVILSGSDRAALDDNFEEFDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHLELRETSLIWNYKYADCDFGRLQARDMLQHLWTGPISNASVDVVQGTRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKSTGERSSLKIPPKSPHYKSRSNSEKKTTNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRNRTNARYQLGSSDDVVSFLKKMASANASG 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7151140 7160884 - evm.model.ptg000002l.673 HCH12g0986 555833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0986 920 Gene3D Glycogen Phosphorylase B; 85 339 - -
HCH12g0986 920 CDD GT20_TPS 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 340 542 - -
HCH12g0986 920 Gene3D Glycogen Phosphorylase B; 340 542 - -
HCH12g0986 920 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 93 558 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 CDD HAD_TPP 591 811 - -
HCH12g0986 920 MobiDBLite consensus disorder prediction 818 869 - -
HCH12g0986 920 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 81 915 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH12g0986 920 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 683 763 - -
HCH12g0986 920 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 85 339 - -
HCH12g0986 920 FunFam Alpha,alpha-trehalose-phosphate synthase 617 688 - -
HCH12g0986 920 Gene3D - 617 777 IPR023214 -
HCH12g0986 920 Gene3D - 683 763 - -
HCH12g0986 920 FunFam Trehalose-6-phosphatase synthase S4 729 843 - -
HCH12g0986 920 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 92 561 - -
HCH12g0986 920 Pfam Trehalose-phosphatase 615 838 IPR003337 GO:0005992(InterPro)
HCH12g0986 920 Pfam Glycosyltransferase family 20 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH12g0986 920 SUPERFAMILY HAD-like 618 914 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0986 HCH-Chr12:7151140 HCH6g1128 HCH-Chr6:45863708 1.30E-124 dispersed
HCH12g0986 HCH-Chr12:7151140 HCH3g0746 HCH-Chr3:5405414 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0986 K16055 - csv:101204478 1657.5