Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0986 | ATGCCTGGGAATAAGTATAACGGTAATTCAAACGGTATTCCAGACCATATTCCAAATAGAGTGGAAAGGCTATTGAGAGATAGAAAGCTAAGGAGAAGCAGCAAGGATTCATATTCGAATGAGGTAAATGAATACAGTAGTAGGGATCTGTCTGAAATAATTGAGAATGACCTTCGTTTGAAAGAAGAAGGAAACAATGGCATTTCCTGTAAATTTTTGGAAAATTCTGTAGCCACTGAAGGATGTGAAAAGCAAGATGGCAAGCCGCTTAGACAACGGTTACTGGTTGTGGCTAATAGGCTGCCTGTCTCCGCTGTTAGGAGAGGTGAAGATTCTTGGTCTCTTGAGATTAGTGCAGGGGGTTTAGTGAGTGCTCTTCTCGGTGTGAAGGAATTTGAGGCAAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGATAGGACAAAAGGCACTCACTGAAGCTTTGGCTGAGAAGAGGTGTATCCCTGTCTTCCTTGATGAAGAGATTGTTCATCAGTACTACAATGGTTACTGCAACAACATCTTATGGCCTTTATTTCATTACCTTGGCCTTCCGCAAGAAGATCGGCTTGCCACCACCCGTAGTTTTCAGTCTCAGTTTGCTGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTGGTTAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTTCTTCCAAAATGTCTTAAAGATCATAACAGTAAGATGAAGGTCGGCTGGTTTCTCCATACTCCTTTTCCTTCTTCTGAAATCCACAGGACCCTCCCATCTAGATCAGAGCTACTGCGTTCAGTACTTGCTGCTGATTTGGTTGGTTTTCACACTTACGACTATGCTCGTCATTTCGTTAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCTGAAGGCGTTGAGGATCAAGGGAAGCTGACAAGAGTTGCTGCATTTCCTATTGGAATAGACTCGGATCGATTCATACGTGCACTTAAGATTCTCGAAGTCCAAACTCATATCAAAGAGTTGAAGGAAAGATTTAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATACTGGCATTTGAAAAGTTCTTAGAAGAAAATCCTGATTGGCGTGACAAAGTTGTTCTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTACTGTTCCAATACATCATCTGGATCGTTCACTTGATTTTCATGCATTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACATCTCTGAGGGATGGAATGAATCTTGTCAGCTACGAGTTTGTTGCATGCCAAGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCACAATCTCTCGGTGCTGGAGCACTTCTGGTCAACCCCTGGAACATAACAGAAGTTGCAAAATCAATTGAACAAGCGTTAAATATGAGTGCTGAAGATAGAGAAAAGCGACATAAGCATAATTTTCACCATGTGACGACACACACTGCCCAGGAATGGGCAGAAACATTTGTAAGTGAACTTAATGATACTGTTGTCGAAGCTGAACTGAGGATAAGACAATTTCGACCCTTACTTCCATTTGATGATGCGATTTCACATTATCGACAATCTACTAATCGGTTACTCATACTGGGGTTCAATGCTGCATTGACTGAACCAGGGGACACCCTGGAGAGAAGAGGTGATCAGATTAAAGAAATGGAACTGAAATTACACCCAGAATTGAAAGAACCCTTGGCCGCGATTTGCAACGACCCAAATACAACAGTAGTCATCCTCAGTGGGAGTGACAGAGCTGCCTTGGATGATAACTTTGAGGAGTTTGATATGTGGTTGGCGGCTGAGAATGGAATGTTTCTACGCTTTACTCGGGGAGATTGGATGACTACGATGCCTGAACATTTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTATTTCACCGAGAGGACTCCTCGTTCCCATTTAGAACTCCGTGAAACTTCACTTATTTGGAACTATAAATATGCAGATTGTGACTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATCTGTGGACAGGTCCGATTTCTAATGCATCAGTTGATGTTGTTCAAGGTACCCGATCCGTTGAGGTGCGAGCTGTCGGGGTTACCAAGGGTTCAGCAATTGACCGAATATTGGGAGAGATAGTTCACAGCAAGTCCATGACGACTCCCATAGACTATGTCTTGTGTATAGGGCATTTTCTTGGGAAGGATGAAGATGTGTACACCTTCTTTGAGCCTGAGCTTCCATCAGATACCATAGGTATGGCAAGAAGCAAGGGAACTGATGGACTTAAGTCAACTGGTGAGAGATCTTCGTTAAAAATTCCACCGAAATCTCCTCACTACAAGTCACGGTCGAATTCCGAGAAGAAAACTACAAATCATAACTGTGCAAATGGTCGTAAACCATCGCCGGAGAAGATTCAATGGAATGTACTTGATCTTAAGGCGGAGAACTACTTTTCGTGTGCCGTTGGACGGAATCGAACGAATGCTCGGTATCAACTTGGATCATCAGATGATGTTGTCTCATTCCTTAAAAAAATGGCAAGTGCCAATGCTTCTGGTTGA | 2763 | 42.6 | MPGNKYNGNSNGIPDHIPNRVERLLRDRKLRRSSKDSYSNEVNEYSSRDLSEIIENDLRLKEEGNNGISCKFLENSVATEGCEKQDGKPLRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKILEVQTHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIEQALNMSAEDREKRHKHNFHHVTTHTAQEWAETFVSELNDTVVEAELRIRQFRPLLPFDDAISHYRQSTNRLLILGFNAALTEPGDTLERRGDQIKEMELKLHPELKEPLAAICNDPNTTVVILSGSDRAALDDNFEEFDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHLELRETSLIWNYKYADCDFGRLQARDMLQHLWTGPISNASVDVVQGTRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKSTGERSSLKIPPKSPHYKSRSNSEKKTTNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRNRTNARYQLGSSDDVVSFLKKMASANASG | 920 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7151140 | 7160884 | - | evm.model.ptg000002l.673 | HCH12g0986 | 555833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0986 | 920 | Gene3D | Glycogen Phosphorylase B; | 85 | 339 | - | - | |
HCH12g0986 | 920 | CDD | GT20_TPS | 93 | 558 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
HCH12g0986 | 920 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 340 | 542 | - | - | |
HCH12g0986 | 920 | Gene3D | Glycogen Phosphorylase B; | 340 | 542 | - | - | |
HCH12g0986 | 920 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 93 | 558 | IPR012766 | GO:0003825(InterPro)|GO:0005992(InterPro) | |
HCH12g0986 | 920 | CDD | HAD_TPP | 591 | 811 | - | - | |
HCH12g0986 | 920 | MobiDBLite | consensus disorder prediction | 818 | 869 | - | - | |
HCH12g0986 | 920 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 81 | 915 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER) | |
HCH12g0986 | 920 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 683 | 763 | - | - | |
HCH12g0986 | 920 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 85 | 339 | - | - | |
HCH12g0986 | 920 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 617 | 688 | - | - | |
HCH12g0986 | 920 | Gene3D | - | 617 | 777 | IPR023214 | - | |
HCH12g0986 | 920 | Gene3D | - | 683 | 763 | - | - | |
HCH12g0986 | 920 | FunFam | Trehalose-6-phosphatase synthase S4 | 729 | 843 | - | - | |
HCH12g0986 | 920 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 92 | 561 | - | - | |
HCH12g0986 | 920 | Pfam | Trehalose-phosphatase | 615 | 838 | IPR003337 | GO:0005992(InterPro) | |
HCH12g0986 | 920 | Pfam | Glycosyltransferase family 20 | 93 | 558 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
HCH12g0986 | 920 | SUPERFAMILY | HAD-like | 618 | 914 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0986 | HCH-Chr12:7151140 | HCH6g1128 | HCH-Chr6:45863708 | 1.30E-124 | dispersed | |
HCH12g0986 | HCH-Chr12:7151140 | HCH3g0746 | HCH-Chr3:5405414 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0986 | K16055 | - | csv:101204478 | 1657.5 |