Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0989 ATGCAAATGAAAGAGAATAGATTGCTCTCTCGAATCCTATTTGCTTCTTCCATTTGTTTCTTCTTCTTCTTCTTCACTGTTGAGAAAGCTTATTCTCTCACCACTCTATTGCCTGCTGATGAAGTGGAAGGTTTGCAGGAAATAGGAAAGAGTTTGGGAAAGAAAGATTGGAATTTCAGTGAAGATCCATGCAGTGGAAGACATGGATGGATTTCTCAAATCAATGAAATTCCAAAAAATATTCCTGGTTTTCAGAATAATGTTACCTGTGATTGCTCTTTTCTTAATTCTACTCTCTGCCATGTTGTTACCATAATTCTCAATTCACAGAGCCTTCAAGGCACTCTCCCGCCACAGCTCTTCAAATTACCTTTCCTGCAGCAAATTGATCTCACAAGGAACTATCTTGGTGGCCAAATTCCTCAAGAATGGGGCTCCACCAAACTTGTTAACATTTCTCTTCTTGGAAATCGGTTGATGGGTTTGATCCCTGAAGAGATTGGAAACATTAGTACTCTTGAGATTTTGGTTCTAGAAATCAATCAGTTGTCAGGAAGTTTACCTGCATCGCTCGGAAGCTTGTCGAAATTACAGATATTACATCTTACCTCAAACAACTTTTCTGGGGAGTTGCCATTCTCACTGGGAATGCTGACCGCATTGAAGGAATTTCGAATTGGCGACAATAACTTCTCGGGACCAATACCGAATTTTATACGTAAATGGACTAATCTTACTGAATTATTCATTCAGGCTAGTGGATTGAGTGGGCCAATTCCTTCTGATATTAGACTGTTGACCAAATTATCTGACTTGAGAATCAGTGACTTGAATGGATCTTCATCACCTTTTCCACCCCTTAGTAATTTGATAAACATTACAAAATTAATATTGAGAAGTTGCAACATCACTGGAAGGCTGCCCAACTATCTAGACCGAATGACATCGTTGAAAATCTTGGACCTCAGCTTCAACAAATTAAGTGGGCGAATTCCCACCAGATTTGATGGTCTTAAAGAGTTGGATAACATATTTTTGACTGGAAACATGCTGAATGGATCAGTGCCTGATTGGATGCTGAAAGGAAAGGGCATTGATCTCTCCTATAATAATTTTACAGTGAACGTTTCTGGGGAAAGCTGTCGATCTCAAAAAGTAAACTTGTTTGCTAGCTCTTCACAAGACAGTGATTATGGAATTCTTTCATGTTTAGCTGGTTCCTCTTGTGCAAAATCTTGGTACTCTCTCCATATTAATTGTGGCGGAAAGGAAGAAACCATTAATGGAACTACCCTGTTTAGAGGGGACCGAAATACAGGCAGTTCTATGTTTTTCGTAACTGGAACAAATTGGGCAATCAGCAACACTGGTAGTTTTATGGATGCTGACGGCTCTGAGGAGGACTATGCTGCAACTAATTCATCTATTCTATCTATGGTGAATCCTGAACTGTACATAACTGCACGCATTTCTCCATTATCTCTCACTTATTACGGGTTCTGCATGGGAAGTGGAAACTACACAGTAAGCCTCCATTTCGCAGAGATAATGTTTACTGATGACAAAACATTTAGCAGTCTTGGGAGTCGCATATTTGATGTATATGTTCAGGGAAAGTTGGTGCTGAAGGATTTCAATATAGCGGATTCAGCAGGTGGCATTGGTAAAGCGATCATCAAAAAATTCATGGTCACTGTGACGAATGGTACCTTAGAGATCCGTTTCTATTGGGCTGGGAAGGGAACAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCACTTATTTCAGCCATTTCAGTAGACCCTGACTTTGAGCCTCCATCAGAGGGTGGAAACGGGTCAACTGGAAAATCTGAAGTTTCTGTTGGTAGAGTGGTTGGAATTGTGGCTGCAGTGGTTTTTGTTATACTATTGGTTCTGGGAATCTTGTGGTGGAGATTCTATCTCCGAAGAAAAAGTACACTTGAACAAGAATTAAAAGGTTTGGATTTGCAGAGCTCTTTTACATTAAGGCAAATTAAAGCTGCCACAAACAATTTTGATGCTGCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTGTTCAAGGGTCTTCTTGCAGACGGTACGGTAATTGCAGTAAAGCAACTTTCTTCAAAATCAAGGCAAGGAAATCGTGAGTTTGTGAATGAAATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTCATGGATGTTGCATTGAAGGAAATCAACTTTTGTTAGTATATGAGTACTTGGAAAATAACAGCCTGGCTCGTGCCTTATTCGGACCTGAAGAACATCAACTAAAATTGGATTGGTCAACAAGGCACAAGATCTGTGTTGGTATAGCTAGAGGTTTGACATATCTTCATGAAGAGTCAAGACTTAAGATTGTCCATAGAGACATCAAAGCTACTAATGTTTTGCTAGACAAAGATCTTAACCCCAAAATATCCGACTTCGGTCTGGCCAAGCTTGACGAAGAAGAAAACACCCACATAAGCACCCGAATTGCTGGAACTTTTGGATATATGGCGCCAGAATACGCGATGCGAGGGTACTTAACTGATAAAGCAGATGTTTACAGTTTTGGTATTGTGGCCTTGGAAATAGTTAGTGGGAGGAGCAACACTATTTACCGAGCAAAGGAAGATTCCTTTTACCTTCTCGACTGGGTACAAACGTTGAAACAGAGAGATAGTTTAATGGAGCTAGTGGATCCCAAGTTAGGCTCCAACTTCAAAAAGAGAGAAGCAATGGCAATGATCAAAATTGCTCTGCTCTGCACTAATGCCACTCCTGCAGCACGACCTAACATGTCATCGGTCGTGAGCATGCTCGAAGGTAAGCTTGCTGTCGAGGAGATAGTTTCAGATCCGAATGTCTCGAAAGAAGACATGAATGCAATGTGGACTCGTATTCAGCTCGACGAAGAGGAATCTAAGATTGAAAGCCAGAAGTCTAGTTTTCTCACAGATGTTTCGACAATTCGTTCTTCGACATCTGTCGGTGATCTCTATCCAATCAACATGTCTCGGTACTTGGATAGTAGAAACTAG 3072 40.76 MQMKENRLLSRILFASSICFFFFFFTVEKAYSLTTLLPADEVEGLQEIGKSLGKKDWNFSEDPCSGRHGWISQINEIPKNIPGFQNNVTCDCSFLNSTLCHVVTIILNSQSLQGTLPPQLFKLPFLQQIDLTRNYLGGQIPQEWGSTKLVNISLLGNRLMGLIPEEIGNISTLEILVLEINQLSGSLPASLGSLSKLQILHLTSNNFSGELPFSLGMLTALKEFRIGDNNFSGPIPNFIRKWTNLTELFIQASGLSGPIPSDIRLLTKLSDLRISDLNGSSSPFPPLSNLINITKLILRSCNITGRLPNYLDRMTSLKILDLSFNKLSGRIPTRFDGLKELDNIFLTGNMLNGSVPDWMLKGKGIDLSYNNFTVNVSGESCRSQKVNLFASSSQDSDYGILSCLAGSSCAKSWYSLHINCGGKEETINGTTLFRGDRNTGSSMFFVTGTNWAISNTGSFMDADGSEEDYAATNSSILSMVNPELYITARISPLSLTYYGFCMGSGNYTVSLHFAEIMFTDDKTFSSLGSRIFDVYVQGKLVLKDFNIADSAGGIGKAIIKKFMVTVTNGTLEIRFYWAGKGTNAIPVRGVYGPLISAISVDPDFEPPSEGGNGSTGKSEVSVGRVVGIVAAVVFVILLVLGILWWRFYLRRKSTLEQELKGLDLQSSFTLRQIKAATNNFDAANKIGEGGFGPVFKGLLADGTVIAVKQLSSKSRQGNREFVNEIGMISALQHPHLVKLHGCCIEGNQLLLVYEYLENNSLARALFGPEEHQLKLDWSTRHKICVGIARGLTYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTIYRAKEDSFYLLDWVQTLKQRDSLMELVDPKLGSNFKKREAMAMIKIALLCTNATPAARPNMSSVVSMLEGKLAVEEIVSDPNVSKEDMNAMWTRIQLDEEESKIESQKSSFLTDVSTIRSSTSVGDLYPINMSRYLDSRN 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7186492 7195187 - evm.model.ptg000002l.670 HCH12g0989 555836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0989 1023 SUPERFAMILY L domain-like 86 359 - -
HCH12g0989 1023 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515(InterPro)
HCH12g0989 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 966 IPR051824 -
HCH12g0989 1023 SMART serkin_6 680 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0989 1023 ProSiteProfiles Protein kinase domain profile. 680 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0989 1023 SUPERFAMILY Protein kinase-like (PK-like) 666 974 IPR011009 -
HCH12g0989 1023 Gene3D Transferase(Phosphotransferase) domain 1 756 966 - -
HCH12g0989 1023 Pfam Malectin domain 415 598 IPR021720 -
HCH12g0989 1023 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 963 - -
HCH12g0989 1023 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 43 211 - -
HCH12g0989 1023 Pfam Protein tyrosine and serine/threonine kinase 683 951 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0989 1023 CDD STKc_IRAK 686 953 - -
HCH12g0989 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 413 603 - -
HCH12g0989 1023 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 650 755 - -
HCH12g0989 1023 Gene3D Ribonuclease Inhibitor 280 397 IPR032675 -
HCH12g0989 1023 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515(InterPro)
HCH12g0989 1023 Gene3D - 413 602 - -
HCH12g0989 1023 Gene3D Phosphorylase Kinase; domain 1 647 755 - -
HCH12g0989 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0989 1023 Gene3D Ribonuclease Inhibitor 54 211 IPR032675 -
HCH12g0989 1023 Gene3D Ribonuclease Inhibitor 212 279 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0989 HCH-Chr12:7186492 HCH12g0991 HCH-Chr12:7237684 0.00E+00 dispersed
HCH8g0968 HCH-Chr8:45826831 HCH12g0989 HCH-Chr12:7186492 1.50E-68 dispersed
HCH12g0989 HCH-Chr12:7186492 HCH12g0990 HCH-Chr12:7218216 2.40E-294 tandem
HCH12g1027 HCH-Chr12:7617345 HCH12g0989 HCH-Chr12:7186492 0.00E+00 transposed
HCH3g0739 HCH-Chr3:5310233 HCH12g0989 HCH-Chr12:7186492 3.80E-215 transposed
HCH7g0034 HCH-Chr7:244029 HCH12g0989 HCH-Chr12:7186492 5.90E-147 transposed
HCH7g0069 HCH-Chr7:456461 HCH12g0989 HCH-Chr12:7186492 1.80E-233 transposed
HCH12g0989 HCH-Chr12:7186492 HCH3g0714 HCH-Chr3:5121585 3.10E-34 wgd
HCH12g0989 HCH-Chr12:7186492 HCH6g0622 HCH-Chr6:37425742 1.50E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81124 PF07714 PK_Tyr_Ser-Thr 5.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0989 - - - 0.0