Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0990 ATGGTAGCTGCTGGAATTGTTGCTGGTTTTATTTTGATACTAATTTCTTCCTTTCAAACTCATCTTCCTTCTTCTGCCGCTCAATTGCCTCTGGATGAAGTTGAAGCTTTGAGATTAATAGGAGAGAAGTTGGGAAAAAAGGATTGGAATTTCAGTGTAGATCCATGCAATAGAACTCATGGATTGATTACACCAGGCAATGATAGGTTCTCTAACAGTACCATCGACTGTGATTGCACCTTTCCTGATAATATCTGCCATGTGGTTAGCATAATTCTCAAGACACAGAACCTCGATGGCGTTCTACCAGCGGAGATCGTCAGGCTGCCTTACCTGAAGCAAATTGATTTCACTAGGAACTATCTTAGTGGCCAAATTCCGGCAGGATGGGGCTCCACCAAACTTGTTGAAATTAACCTTCTTGGAAATCGGCTGACGGGTGGGATTCCTCGAGAGATTGGAAACATCAGCACTCTTGAGGTTTTGGTCCTGGAAACCAATCAACTCTCAGGAACCATACCGGAGTCACTTGGAACTCTGCCCCGTTTGCGAAGACTGCATCTTACCTCGAATTACTTTTCTGGGACGTTGCCGTTATCACTGGGAATGTTAACCTCATTGGAAGAATTTCGAATTAACGACAATAACTTCTCAGGACCGATTCCCAGTTTCATAAGTAATTGGAGAAATCTTACTGAATTATTCATTCAGGCAAGTGGATTGAGTGGCCCAATTCCTTCTGATATCAGACTGTTGACAAACTTAGATAACTTGAGAATCAGTGACTTGAATGGATCAGCTTCATCACCCTTCCCATTCCTTGATAATATGTCAAAAATTGAACGAGTGATAATGAGAAGTTGCAACATCATCGGGGAGCTGCCCAACTATCTACATGAAATGACATCAGTGAAAATCTTAGATCTCAGTTTTAACAAGATTACAGGACAAATTAGTAATAGATTTCTAGTTACTCCAAAGATCGATGACATATATTTAACTGGAAACTTCCTGAGTGGACCAGTGCCTGAATCGATACTGGGGCTATCTGAAAGGAGAATCGATCTTTCTTACAACAATTTTACAGTGAAGAATTTGGATATCTGTTCATCAAGAACATTAAATTTGTTTTCGCCAGCCAATTATTTTGGAGATCAACCATGTGCAAATGTCTTCTCTTGTTCAAAAGAATCAAAATCCGTGTATTCTCTTCATATAAATTGTGGCGGGAGCCAAAAAACCATAAACGGATCCACCATTTTTGAAGATGACATTGATTCGGGCAGTGCATCCACGGTTTTCCGGAGTCTAACAAACTGGGCATTTAGCAGTACTGGTAATTTTATGGACGATGCTGACTCTCAAGATACCTTCGTTGTAAATAATATACCAGGCGCTGTGTCGATGGAAAACGTAAACCCTGAACTGAGTGAACTCTTCATGAATGCCCGAAGGTGTGCGTTATCTCTTACTTATTACGCCTTGTGCATGGCAAATGGCAACTACACGGTTAATCTCTATTTCGCGGAGATCATGTTTACTAATGACACAACGTACAGAAGTCTTGGCAGACGCATATTTGATGTTTATATTCAGGGAGACCGGGTGCTGCAGGATTTCAATATTGCAGAGAGAGCAGGTGGTGCTCATAAAGCTATTATAATACCCTTCAAAAGAGTCACAGTGACCAATGGAACCTTGGAAATCCGGTTCCATTGGGCTGGAAAGGGGACCAATAATATCCCGGGGAGAGGAGATTATGGTCCTCTGATTTCAGCCATTTCTATAGATTCTGATATCAAGCCGCCACCGGAAGATGTCGAGCCGCCACCGAATGCCATATCTGCAGTTGCAGTGGTTGGAATTGTTGCTGCCACGACCTTCTTTATCTTTTTGGTTTTGAGCATCCTATGGTGGAGAGGCTGTCTAGGAAAAGAAAGAACACTTGAACAAGAGTTGAAGGGCATAGATCTAGCAACAGGTTCATATACACTAAGACAAATCAAAGTTGCCACGAACAATTTTGCTGCTGAAAACAAGATTGGAGAAGGTGGCTTTGGTCCTGTTTACAAGGGTGTTATGGCAGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCGAAATCGAAACAAGGAAATCGTGAATTCGTAAACGAGATAGGCATGATATCTGCTTTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTACTAGTATATGAATACATGGAAAACAATAGTCTTGCCCGTGCCTTATTCGGACCTAAAGAATGTCAACTGAAATTGGATTGGCCAACGAGGCACAAGATCTGTGTTGGTATAGCTAGAGGTTTAGCTTATCTTCACGAGGAGTCCACATTGAAGATTGTTCATAGAGACATCAAAGCCACTAATGTTCTCTTGGATAAAAATCTCAATCCCAAGATATCCGATTTCGGCTTGGCCAAGCTTGATGAAGAAGAAAATACACACATAAGCACACGGATTGCTGGAACTTTTGGTTATATGGCACCGGAATATGCGATGCGGGGCTACTTAACTGATAAAGCCGACGTTTATAGTTTCGGTATTGTGGCTTTGGAAATAGTTAGTGGACTGAGCAACACAAGTTATCGATCAAAGGATGATTGCTTTTATCTTCTTGATTGGGCACATGGTTTAAAAGAGAAAGGCAGTTTAATGGAGCTAGTCGATCCACGGTTGGGTCGCGAATATGAGAAAGAGGCGATGACGATGATCAATATAGCTCTTCAATGTACTAACGTTGTTGCTGCAGAAAGACCCACCATGTCATCTGTGGTGAGCATGCTGGAAGGGAAGGTTGTTGTGAAGGAGATAGTTTCAAATCCAAGCATTCCAAAACAAGATATGAATGCTATGTGGGCCCGTATTCATCGTAGCGAAGATCAAACGACGAGCGAGAGCCAGACGCAAAGTATGTTGTTCGATGGATCTTCTTCAACCTCTTTCAGTGATCTCTATCCCCTCACCGTGAATTCTAAGTATTTGGAGGACAGAAGATAG 3048 41.77 MVAAGIVAGFILILISSFQTHLPSSAAQLPLDEVEALRLIGEKLGKKDWNFSVDPCNRTHGLITPGNDRFSNSTIDCDCTFPDNICHVVSIILKTQNLDGVLPAEIVRLPYLKQIDFTRNYLSGQIPAGWGSTKLVEINLLGNRLTGGIPREIGNISTLEVLVLETNQLSGTIPESLGTLPRLRRLHLTSNYFSGTLPLSLGMLTSLEEFRINDNNFSGPIPSFISNWRNLTELFIQASGLSGPIPSDIRLLTNLDNLRISDLNGSASSPFPFLDNMSKIERVIMRSCNIIGELPNYLHEMTSVKILDLSFNKITGQISNRFLVTPKIDDIYLTGNFLSGPVPESILGLSERRIDLSYNNFTVKNLDICSSRTLNLFSPANYFGDQPCANVFSCSKESKSVYSLHINCGGSQKTINGSTIFEDDIDSGSASTVFRSLTNWAFSSTGNFMDDADSQDTFVVNNIPGAVSMENVNPELSELFMNARRCALSLTYYALCMANGNYTVNLYFAEIMFTNDTTYRSLGRRIFDVYIQGDRVLQDFNIAERAGGAHKAIIIPFKRVTVTNGTLEIRFHWAGKGTNNIPGRGDYGPLISAISIDSDIKPPPEDVEPPPNAISAVAVVGIVAATTFFIFLVLSILWWRGCLGKERTLEQELKGIDLATGSYTLRQIKVATNNFAAENKIGEGGFGPVYKGVMADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLARALFGPKECQLKLDWPTRHKICVGIARGLAYLHEESTLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGLSNTSYRSKDDCFYLLDWAHGLKEKGSLMELVDPRLGREYEKEAMTMINIALQCTNVVAAERPTMSSVVSMLEGKVVVKEIVSNPSIPKQDMNAMWARIHRSEDQTTSESQTQSMLFDGSSSTSFSDLYPLTVNSKYLEDRR 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7218216 7232865 - evm.model.ptg000002l.669 HCH12g0990 555837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0990 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 644 750 - -
HCH12g0990 1015 Gene3D - 400 599 - -
HCH12g0990 1015 Pfam Malectin domain 403 594 IPR021720 -
HCH12g0990 1015 Pfam Protein tyrosine and serine/threonine kinase 677 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0990 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 599 - -
HCH12g0990 1015 SMART serkin_6 675 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0990 1015 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 35 197 - -
HCH12g0990 1015 MobiDBLite consensus disorder prediction 979 994 - -
HCH12g0990 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0990 1015 Gene3D Ribonuclease Inhibitor 268 387 IPR032675 -
HCH12g0990 1015 Gene3D Transferase(Phosphotransferase) domain 1 751 958 - -
HCH12g0990 1015 SUPERFAMILY Protein kinase-like (PK-like) 662 946 IPR011009 -
HCH12g0990 1015 MobiDBLite consensus disorder prediction 975 994 - -
HCH12g0990 1015 Gene3D Ribonuclease Inhibitor 42 196 IPR032675 -
HCH12g0990 1015 Gene3D Ribonuclease Inhibitor 197 267 IPR032675 -
HCH12g0990 1015 CDD STKc_IRAK 681 947 - -
HCH12g0990 1015 Gene3D Phosphorylase Kinase; domain 1 644 750 - -
HCH12g0990 1015 ProSiteProfiles Protein kinase domain profile. 675 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0990 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 751 957 - -
HCH12g0990 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 973 IPR051824 -
HCH12g0990 1015 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
HCH12g0990 1015 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515(InterPro)
HCH12g0990 1015 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515(InterPro)
HCH12g0990 1015 SUPERFAMILY L domain-like 77 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0990 HCH-Chr12:7218216 HCH12g1027 HCH-Chr12:7617345 0.00E+00 dispersed
HCH12g0989 HCH-Chr12:7186492 HCH12g0990 HCH-Chr12:7218216 2.40E-294 tandem
HCH12g0990 HCH-Chr12:7218216 HCH12g0991 HCH-Chr12:7237684 4.1e-310 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81125 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0990 - - - 0.0