Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0991 ATGTTCCTGTCTCGGATTCTCTTTGCTTTCTGCTTCTTCACCCTCGCTTACGGAGCCACCCGGTTGCCGGTCGACGAAGTATTAGCTTTGAGGGAGATAGCAGAAACATTGGGGAAGACTGACTGGAATTTCACCGCCGATCCCTGTGGCGGGCTGGCCTCCGGTTGGATTTCTCAGAACAACGCCATTCCTGGGTTCAATAATTCTGTCATCTGCAATTGCTCATTTCTCAGTAATACTCTCTGTCATGTCACTAATATTGTTCTCAAGTCACAGAGTCTTCCAGGAACTCTCCCACCACAGATAGTTAAATTGCCATTCCTGCAAGAACTTGATCTTACCCGTAACTATCTTAACGGTTCAATTCCTCTAGAATGGGGTTCCACCAATCTTCTCAAACTTTCCCTTCTTGGAAATCGGTTGACGGGTCCGATCCCGAAAGAGATTGGAAACATCTCTACTCTTACAGAATTGGTTTTGGAAATGAACCATTTGTCAGGAAGTTTGCCTCCAGCACTTGGAGATTTGCGCAGCTTATCAAGATTACTTCTTACATCAAACAACTTTTCTGGGGAGCTCCCACCTTCACTAGAAAGGCTGACCTCATTGACGGACTTTCGAATTAGTGATAATCACTTTACAGGGCAAATACCACAATATATTCAAAACTGGACGAGTCTTGGAAAAGTTGCTATTCAAGCAAGCGGGTTGAGCGGACCGATTCCTTCTGAATTTGGACTTTTGACAAAATTAACTGACTTGAGAATCAGTGACTTGAATGGAGCTTCATCACCCTTCCCACCCCTTATTAATTTGACAAGTTTGAAAGTTCTGATATTGAGAAGTTGCAATATAACAGGGATGCTGCCCAACAATCTAAATGGAATGACAGCATTGAAAACCTTAGACTTCAGCTTTAACAAAATAAGCGGACAAATTCCCGTCAGCTTTGAAGCTTTGAAAAAAGTAGATAGCATATATTTAGCTGGAAACCTGCTAAATGGGTCAGTGCCTACTTGGATGCTACTGCAAGGAGAAAGCATCGATCTCTCTTATAACAAATTCACAGGGACTACTCAGACCTCAAGTTGTCAATCACGAAATTTAAACCTGTTTTCAAGCTCTTCACATGATAATACTTCTGCCATCGTTTCATGTTTAGCAGGCTCGACCTGTCAAAAAACTTGGTACTCTCTCCATATCAACTGTGGTGGGAAAGAAGAACTGATTAATGGAACAGCCAGATTTGAAGAAGACACGAATACCGGCAAGTCATCATTGTTCTTCCAAGGGGGAGGGAATTGGGCATTCAGCAACACGGGTAATTTTATGGATGATGATCGATCAACAGATGACTTTATAGCAATAAACTCATCCGTTCTCTCAATGGCAAATTCACAATTATACACGAGGGCACGCATTTCTCCAATCTCTCTAACTTATTATGCATATTGCATGGGAAATGGAAACTACACTGTAAGCCTCCATTTTGCTGAGATAATGTTCACTAATGACAAAACTTTCAGCAGCCTTGGAAGACGTGTATTTGATGTTTACGTTCAGGGAAAGAGGGAGTTGAAGGATTTTAATATTGCGGATGCAGCAGGTGGTGTTGGCAAACCTTTTATTCAAAAGTTCACCGTTTCTGTGACTAATGGTACATTGGAAATTCGCTTCTTTTGGGCTGGAAAGGGGTCAAATGCTATCCCTGTGAGAGGAATTTATGGTCCTTTGATTTCAGCCATTTCCGTGGATCCTGACTTTGTGCCACCCTCAGAAGCTGCAGAAGGTGGAAAGGACATTTCCGCCGGTGTAGTGGTTGGAATTGTGGCTGCTGTGGTTGTTGTTATCTTCTTGGTTCTGGGAATCCTGTGGTGGAGAGGCTGCCTAACAAAGGAAAGAACGCTTGAACAGGAGTTGAAGGGTCTAGAGCTATCAACGGGTTCGTTTTCATTGAGGCAAATTAAAGCTGCCACAAACGATTTTGACTCTGTTAATAAGATAGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTGCAGATGGCACCGTAATTGCAGTGAAGCAACTTTCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCAGCACCCTCATCTAGTGAAGCTTCATGGATGTTGTATTGAAGGGAATCAACTTTTGCTAGTATATGAATACTTGGAAAATAATAGTCTTGCCCGTGCCTTATTTGGACCTGAAGAACATCAAATAAAATTGGATTGGCCAACAAGGCACAAGATCTGTGTTGGTATAGCGAGAGGTTTAGCGTATCTTCATGAAGAGTCCAGATTGAAGATCGTTCATAGAGACATCAAAGCTACCAATGTTCTGCTAGATAAAAATCTCAACCCCAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACACACATAAGCACTCGAGTCGCTGGAACTTTTGGATATATGGCACCAGAATATGCAATGCGAGGCTACTTAACGGACAAAGCCGATGTTTACAGCTTCGGTGTTGTGGCTTTGGAAATCGTTAGTGGTCGGAGCAACACAAGTTATCGAACAAAGGATGATTGCTTTTATCTTCTTGACTGGGTACATAGTTTAAACGAGAAAGGCAATTTAGAAGAGCTAGTCGATCAACGGTTAGGCTCGAACTTCAACAAGAAAGAAGCGATAGGGATGATCAATATAGCTCTTCAATGCACTAATGTGGTTTCTGCAGAAAGGCCCGCCATGTCATCTGTGGTGAGCATGTTGGAAGGGAAGGTTGTTGTGAACGAGGTTGTTTCGGATCCAAGCGTCAGAAAACACGATATGAATGTAATGTGGAGCCAAATAAGTAACCAGAAAGGTCATACGACGGGTGAGAGCCAGACACAAAGTATGTCGATGGATGGACCGTGGACTGGGTCGACAACTGCCAGTGATCTCTATCCCATCAACATGGATTCTAAATACTTGGAGAATAGAGACTAG 3018 42.61 MFLSRILFAFCFFTLAYGATRLPVDEVLALREIAETLGKTDWNFTADPCGGLASGWISQNNAIPGFNNSVICNCSFLSNTLCHVTNIVLKSQSLPGTLPPQIVKLPFLQELDLTRNYLNGSIPLEWGSTNLLKLSLLGNRLTGPIPKEIGNISTLTELVLEMNHLSGSLPPALGDLRSLSRLLLTSNNFSGELPPSLERLTSLTDFRISDNHFTGQIPQYIQNWTSLGKVAIQASGLSGPIPSEFGLLTKLTDLRISDLNGASSPFPPLINLTSLKVLILRSCNITGMLPNNLNGMTALKTLDFSFNKISGQIPVSFEALKKVDSIYLAGNLLNGSVPTWMLLQGESIDLSYNKFTGTTQTSSCQSRNLNLFSSSSHDNTSAIVSCLAGSTCQKTWYSLHINCGGKEELINGTARFEEDTNTGKSSLFFQGGGNWAFSNTGNFMDDDRSTDDFIAINSSVLSMANSQLYTRARISPISLTYYAYCMGNGNYTVSLHFAEIMFTNDKTFSSLGRRVFDVYVQGKRELKDFNIADAAGGVGKPFIQKFTVSVTNGTLEIRFFWAGKGSNAIPVRGIYGPLISAISVDPDFVPPSEAAEGGKDISAGVVVGIVAAVVVVIFLVLGILWWRGCLTKERTLEQELKGLELSTGSFSLRQIKAATNDFDSVNKIGEGGFGPVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEGNQLLLVYEYLENNSLARALFGPEEHQIKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGRSNTSYRTKDDCFYLLDWVHSLNEKGNLEELVDQRLGSNFNKKEAIGMINIALQCTNVVSAERPAMSSVVSMLEGKVVVNEVVSDPSVRKHDMNVMWSQISNQKGHTTGESQTQSMSMDGPWTGSTTASDLYPINMDSKYLENRD 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7237684 7247048 - evm.model.ptg000002l.668 HCH12g0991 555838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0991 1005 MobiDBLite consensus disorder prediction 961 990 - -
HCH12g0991 1005 Pfam Protein tyrosine and serine/threonine kinase 665 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0991 1005 SUPERFAMILY Protein kinase-like (PK-like) 646 958 IPR011009 -
HCH12g0991 1005 Gene3D Ribonuclease Inhibitor 229 399 IPR032675 -
HCH12g0991 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
HCH12g0991 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
HCH12g0991 1005 ProSiteProfiles Protein kinase domain profile. 662 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0991 1005 SUPERFAMILY L domain-like 69 372 - -
HCH12g0991 1005 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515(InterPro)
HCH12g0991 1005 Gene3D Ribonuclease Inhibitor 34 152 IPR032675 -
HCH12g0991 1005 Gene3D Ribonuclease Inhibitor 153 228 IPR032675 -
HCH12g0991 1005 Pfam Malectin domain 398 582 IPR021720 -
HCH12g0991 1005 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 260 - -
HCH12g0991 1005 Gene3D Transferase(Phosphotransferase) domain 1 738 948 - -
HCH12g0991 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 396 587 - -
HCH12g0991 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 950 IPR051824 -
HCH12g0991 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0991 1005 Pfam Leucine Rich Repeat 108 127 IPR001611 GO:0005515(InterPro)
HCH12g0991 1005 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
HCH12g0991 1005 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515(InterPro)
HCH12g0991 1005 Gene3D Phosphorylase Kinase; domain 1 628 737 - -
HCH12g0991 1005 SMART serkin_6 662 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0991 1005 CDD STKc_IRAK 668 935 - -
HCH12g0991 1005 Gene3D - 400 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0989 HCH-Chr12:7186492 HCH12g0991 HCH-Chr12:7237684 0.00E+00 dispersed
HCH12g0991 HCH-Chr12:7237684 HCH12g1027 HCH-Chr12:7617345 0.00E+00 dispersed
HCH12g0990 HCH-Chr12:7218216 HCH12g0991 HCH-Chr12:7237684 4.1e-310 tandem
HCH12g0991 HCH-Chr12:7237684 HCH12g0992 HCH-Chr12:7255887 9.60E-219 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81126 PF07714 PK_Tyr_Ser-Thr 1.90E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0991 - - - 0.0