Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0992 ATGGATTTTCTGGTCTGGAATTTTAAGAGTACTGTTAGTGTTCTTCTCTTTGGATTACTCCTTTTGAATTGTTTATCCGGATTTGGATCGAATGCTCAAAGAACTTTACCTGATGAAGAAGTGAGAGCGCTTCAAGCAATAACTAGAGAACTAAGGAACTTAAATTGGAATGTCCACCAAAATTCTTGTGATGCTGGTGATGGCTTTTTTAACAGAGTTATTAATGTACGTGATCCTGAGATTATCAGTGAGGTAAACTGCACCTGTACCACAGTTTGCAGTGTCACTAGCATCCAGCTAAAGGGTCTCAATCTATCTGGAATTCTACCAGCAGCATTTGGAAATCTTACTCAATTGCGGGTGTTAGATCTAAGTCGCAATTTAATATCTGGATCAATCCCTAGAGAATTTGCTCGCATTCCACTTGTTGTGCTGTCCATGTTGGGAAACCGGCTCAGTGGTCAGATTCCTTCAGAAATTGGTGATATTGCTACACTGGAGCAGCTGGTATTGGAAAACAATCAGTTTGGAGGAAACCTTCCTGAAAGCCTCGGCAGACTGAACCGCTTGGATAGACTTCTTCTTTCTGCAAATAATTTCAACGGGACGATTCCAGAATCATATGAAAACTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATAATGTATCGGGAACGCTACCCGAATTCATTGGCAACTGGACCAAGCTTGATAGGCTGGATATTCAAGGAACTTCTATGGAGAGCCCCATTCCTCGTGCCATATCTGAGTTGAAAAACTTAACAGAACTGAGGATAACTGATTTGAAGGGATCACCCACGAGTTTCCCCAATTTGACACAATTGACATCTTTAGAAGAATTGGTCCTAAGAAACTGCTTAATTGAGGGCCGCATTCCCTTATATATTGGACAATTTAACAACTTAAAAACTTTAGATCTTAGCTTCAACAGATTGAGTGGTCCAATTCCAGATACATTCCAGAATCTGATAAACAATAATAATCACAGATATCTATTTCTGACTAACAACTCATTAAGCGGTCAAGTACCTAGCTGGATTGTGAACAGCCGAAGGAACATAGATTTATCTTACAACAATTTTACAGGGTCACCCGTTTCCAGTTGTCAACAGTCTGATGTGAACTTAGTTTCCAGTTATTCAAGTATGACAAATCAAAACATTGCTTGGTGCCTGAGGGAGGATCTTCCTTGCCCTAGAGAAGATCGATTTCATTCATTATTCATAAATTGTGGAGGACGAAGTATGGAGGTTGATGGTAATACATATGAGGAAGATCTGAGTCAGGGTGGCAGGTCAAATTTCCTCTCTGTTTCAGAAAGATGGGCTTATAGCAGCACTGGTGTTTTTCTTGGAGACGAGAATGCTGATTACCTTGCAAGTGCAACAAGTACAAATGTGCCTGCTTCAGGTGTATATACAACAGCTCGACTTTCTCCTTTGTCGCTTAAGTATTACGGACTTTGCTTGCGAAGGGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTAATGACCAAACATTTAGAAGCCTGGGGGAACGCATATTTGATATCTCAATTCAAGGAAGCTTGGTTAAAAAAGATTTCAATATAATGGAGGAAGCAGGAGGTGTTGGTAACATTACTATTGTGGAAGAGCCTAATGTTCTAGTCAATGGCAGCACTCTTGAGATCCACTTATACTGGGCTGGTAAAGGAACAACTGCCATTCCAGACAGAGGGGTGTATGGACCTCTGATATCTGCTATCACAGTGACACCAAACTTTGATGTTGACACTGGAAGGCTATCGGGCGGATCTATTTCCGGCATCGTTATTGGTACCGTTTTGTTTGTCGCGTTTGTCGTGTTGGTATTGTTTGTTCTCAGAAGGAAGGGTTACTTGGGTAAAAAGAACATTGAAGATAGTGAATTGCGAGGCCTAGATTTACAGACGGGTTATTTCAGTCTGAAACAAATAAAATCAGCCACTAATAACTTTGATGCGTCATATAAGATAGGCGAGGGCGGTTTCGGTCCAGTCTATAAGGGAGAGTTGGCAGATGGTACTTTAATTGCTGTGAAGCAGCTATCCTCTAAATCAAGGCAAGGGAACCGCGAATTCGTCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTCTATGGCTGTTGCATTGAAGGAAACCAGTTATTGCTTATATATGAATATCTGGAGAACAATAGTCTTGCCCGTGCACTTTTTGGCGCCGAGGAGCACCGACTACACTTGGATTGGCCGAGAAGGATGAAGATATGCTTGGGTATAGCGAAGGGATTGGCTTACCTTCATGAAGAATCAAGATTGAAAATTGTTCACAGAGATATAAAAGCTACCAATGTGCTGCTTGATAAGAACCTAAATGCCAAGATTTCTGACTTCGGTTTGGCTAAGCTCGACGAAGAGGAAAACACCCATATCAGCACAAGAATTGCGGGCACAATAGGTTACATGGCTCCTGAGTATGCGATGAGGGGTTACTTGACCGATAAAGCTGATGTTTACAGCTTTGGAGTGGTAGCCTTGGAGATTGTTAGTGGGAAAAGTAACACAAATTACAGGCCAAAGGAGGAGTTTGTTTATCTTCTTGACTGGGCTTATGTTCTACAAGAGCAAGGAAACCTACTCGACCTCGTCGATCCAAGTCTCGACTCACATTACTTAAAGGAGGAGGCCTTGAGGATGCTCCATATAGGTCTCTTATGCACAAACCCATCTCCCACTCTCAGGCCATCTATGTCTTCTGTGGTTAGCATGCTTGAAGGCAAGGTTGCAGTCCAAGCACCAACCATCATGCGCAATGCTGCTGATCAGGATGCAAGGTTCAAAGCCTTTGAGTTGCTATCACATGACAGCGTAACAAACATTTCGACATCGACATCATCACAACAGATGCAGAAAAGTATGTTGATCGACGGGCCATGGATCGACTCAACTACTTCTACTCAAAACAAGGATGAAACCCAGGATAGTCTCCTTTAG 3051 41.82 MDFLVWNFKSTVSVLLFGLLLLNCLSGFGSNAQRTLPDEEVRALQAITRELRNLNWNVHQNSCDAGDGFFNRVINVRDPEIISEVNCTCTTVCSVTSIQLKGLNLSGILPAAFGNLTQLRVLDLSRNLISGSIPREFARIPLVVLSMLGNRLSGQIPSEIGDIATLEQLVLENNQFGGNLPESLGRLNRLDRLLLSANNFNGTIPESYENLRNLTDFRIDGNNVSGTLPEFIGNWTKLDRLDIQGTSMESPIPRAISELKNLTELRITDLKGSPTSFPNLTQLTSLEELVLRNCLIEGRIPLYIGQFNNLKTLDLSFNRLSGPIPDTFQNLINNNNHRYLFLTNNSLSGQVPSWIVNSRRNIDLSYNNFTGSPVSSCQQSDVNLVSSYSSMTNQNIAWCLREDLPCPREDRFHSLFINCGGRSMEVDGNTYEEDLSQGGRSNFLSVSERWAYSSTGVFLGDENADYLASATSTNVPASGVYTTARLSPLSLKYYGLCLRRGSYNVKLHFAEIMYTNDQTFRSLGERIFDISIQGSLVKKDFNIMEEAGGVGNITIVEEPNVLVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPNFDVDTGRLSGGSISGIVIGTVLFVAFVVLVLFVLRRKGYLGKKNIEDSELRGLDLQTGYFSLKQIKSATNNFDASYKIGEGGFGPVYKGELADGTLIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGAEEHRLHLDWPRRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLDSHYLKEEALRMLHIGLLCTNPSPTLRPSMSSVVSMLEGKVAVQAPTIMRNAADQDARFKAFELLSHDSVTNISTSTSSQQMQKSMLIDGPWIDSTTSTQNKDETQDSLL 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7255887 7266112 + evm.model.ptg000002l.667 HCH12g0992 555839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0992 1016 Gene3D Phosphorylase Kinase; domain 1 640 747 - -
HCH12g0992 1016 SUPERFAMILY L domain-like 86 371 - -
HCH12g0992 1016 SUPERFAMILY Protein kinase-like (PK-like) 654 944 IPR011009 -
HCH12g0992 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 277 372 - -
HCH12g0992 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 955 - -
HCH12g0992 1016 CDD STKc_IRAK 678 945 - -
HCH12g0992 1016 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515(InterPro)
HCH12g0992 1016 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515(InterPro)
HCH12g0992 1016 Pfam Protein tyrosine and serine/threonine kinase 676 939 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0992 1016 Gene3D Ribonuclease Inhibitor 206 296 IPR032675 -
HCH12g0992 1016 Gene3D Ribonuclease Inhibitor 39 205 IPR032675 -
HCH12g0992 1016 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515(InterPro)
HCH12g0992 1016 MobiDBLite consensus disorder prediction 997 1016 - -
HCH12g0992 1016 Gene3D Ribonuclease Inhibitor 297 402 IPR032675 -
HCH12g0992 1016 Pfam Malectin domain 415 595 IPR021720 -
HCH12g0992 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
HCH12g0992 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 180 - -
HCH12g0992 1016 Gene3D Transferase(Phosphotransferase) domain 1 748 967 - -
HCH12g0992 1016 ProSiteProfiles Protein kinase domain profile. 672 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0992 1016 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 967 IPR051824 -
HCH12g0992 1016 SMART serkin_6 672 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0992 1016 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 747 - -
HCH12g0992 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0992 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 600 - -
HCH12g0992 1016 Gene3D - 413 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0992 HCH-Chr12:7255887 HCH6g0622 HCH-Chr6:37425742 0.00E+00 dispersed
HCH12g0991 HCH-Chr12:7237684 HCH12g0992 HCH-Chr12:7255887 9.60E-219 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81127 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0992 - - - 0.0