Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1027 ATGGTAGCTGCTGGAATTGTTGCTGGTTTTATTTTGATACTGATTTCTTCCTTTCAAACTCATCTTCCTTCTTCTGCCGCTCAATTGCCTCCGGATGAAGTTGAAGCTTTGAGGGAGATAGGTGAGACGTTGGGAAAGACTGACTGGAATTTCGCCGTCGATCCCTGCTCGCCGGACTCCGGTTGGATTTCTCAGAACACCAACATTCCAGGGTTTACTAATTCTGTCGAATGCAACTGCTCATTTGCCGATAATACAGTCTGCCACGTCACTAATATACTTCTCAAGTTCCAGAGTCTCCCAGGCACTCTTCCACCGCAAATCGTCAGGTTGCCATTTCTGGAAGAACTCGATCTTACCCTTAACTATCTCAGCGGTCAAATTCCTCCAGAATGGGGTTCCACCAATCTTGTCAAACTATCCCTTCTTGGAAATCGGTTGACGGGTCCAATCCCAGAAGAGATTGGAAATATCTCTACTCTTTCAGAATTGGTCTTGGAAATAAATAATTTTTCGGGAAGTTTACCTCCAGCACTTGGAAATTTGTCTAATTTAAAAAGATTACTTGTTACGTCAAACAACTTTTCTGGGGTTCTCCCATCTTCAATGGAAAGGCTGACCTCGTTGACAGACTTTCGAATTGGTGACAATCATTTTTCAGGGCAAATACCTAAATTTATTCAGAACTGGATAAATCTTAATAGACTATTTATTCAGGCAAGCGGGTTGAGTGGACCAATTCCTTCTGAAATTGGACTTTTGACCAACTTAACTGACTTGAGAATCAGCGACTTGAATGGAGCTCCGTCGACCTTCCCACCCTTTAAAAATCTGAAAAAAATGACATATTTGATACTGAGGAGTTGCAATATAACTGGGGTTCTGCCCAACGATCTAGATGGGAGTATGACAGCATTGAAAATCTTAGACTTCAGTTTTAACAAAATAAACGGATCAATTCCTCCCAGCTTCTCAACTTTAAAAAGGATAGAAAATATGTATTTAACTGGAAACTTGCTAAGTAAATCAGTGCTTAATTGGACGCCACAGAATGGAGAGAGCATTGATCTCTCTTATAACAAATTCAAATGGATAAATGATGAGAACCCGGGTTGTCAACAAAATTTAAACCTGTTTGCAAGCTCTTCACAGGATAATGCTTCTTCAATCGCTCCTTGTTTAGGGGTCACTGCTTGTACAAAACCTTGGTACTCTCTCCATATCAATTGTGGTGGGGAGGAAGTATTCATCAATGGAACAAGTACCACCAAATTTGAAGCAGATCGAAATGCTGGCGGCGAGTCATCGATGTATTTCAAAGGTGGAGAAAATTGGGTAGTAAGCAACACGGGTAATTTTATGAATGACAATCGCACAAGACGGGGCTTTATTGCATTTCCAGTAAATGCATCTGCTCTCTCAATAACAAATCCTGAATTGTACAAGACGGCGCGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCATGGCAAATGGAAACTACACCGTAAGCCTCCACTTTGCAGAGATAATGTTTACTGATGATAAAACTTACAGAAGCCTTGGAAGACGCATATTTGATGTCTACATTCAGGGAAAGCGGGAGTTGAAGGATTTTAATATTGTGGATGAAGCAGGTGGTGTCGGCAAACCTATCATAAAAAACTTCACTGTTCCTGTGACTGACACTACTTTGGAGATTCGCTTCTTTTGGGCTGGGAAGGGAACACCTGCTATCCCTGTGAGAGGAGTTTATGGTCCTTTGATTTCAGCCATTTCTGTGACATCTGACTTTGCGCCACCATCAGAAGGTGGAAATACCATTTCCGCCGGTGTAGTGGTTGGAATTGTGGCTGCTGTGGCTATTGTTATCTTCTTGGTTCTGGGAATCCTGTGGTGGAGAGGCTGTCTAAGAAAGGAAAGAACACTTGAACAGGAGTTGAAGGGTTTAGATCTAGCAACTGGTTCATTTTCATTGAGGCAAATTAAAGCTGCCACAAACAATTTTGATGCCGTCAATAAGATAGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTGCAGATGGCACCGTAATTGCAGTGAAGCAACTTTCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCTTTGCAGCACCCTCATCTAGTGAAGCTTTATGGGTGTTGTATTGAAGGGAATCAACTTTTGCTTGTATATGAATACTTGGAAAATAATAGCCTTGCTCGTGCCTTATTTGGATCTGAAGAATCCCAACTGAAATTGAATTGGCCGACAAGGCGCAATATTTGTATTGGTATAGCGAGAGGTTTAACGTATCTTCACGAGGAATCAAGATTGAAGATCGTTCACAGAGACATCAAAGCTACCAATGTTCTGCTAGATAAAAATCTCAACCCCAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACACACATAAGCACTCGGATTGCTGGAACTTTTGGATATATGGCTCCAGAATATGCAATGCGAGGCTACCTAACAGACAAAGCCGATGTTTACAGCTTTGGTATTGTGGCCTTGGAAATAGTGAGCGGTCGTAGCAATACAAGTTACCGATCAAAGGATGACTGTTTTTATCTTCTTGACTGGGCACATATTTTAAATGTGAAAGGCAGTTTAATAGAGCTAGTCGATCCACGATTAGGCTCCGACTTAAACAATGGAGAAGTGATGGCAATGATCAATATAGCTCTCCAATGCACTAATGTGATTGCTGCAGAAAGACCCACCATGTCATCGGTGGTGAGCATGCTGGAAGGGAAGATTGCTGTGAAGGAGGTGGTTTCAGATCCAAACGTCTCAAAACAAATTTTGAATGTAATGTGGTCTCATCCTCATAACCATGAAGGCCAAACGATAAGCGAGAGCCAGACGCAAAGCATGTTGATGGATGGACCACGGACTGGTTCTTCGACCTCTATCAGTGATCTCTATCCTATCAACTTGTATTCTAACTACTTAAAGAATAGAGACTAG 3048 41.54 MVAAGIVAGFILILISSFQTHLPSSAAQLPPDEVEALREIGETLGKTDWNFAVDPCSPDSGWISQNTNIPGFTNSVECNCSFADNTVCHVTNILLKFQSLPGTLPPQIVRLPFLEELDLTLNYLSGQIPPEWGSTNLVKLSLLGNRLTGPIPEEIGNISTLSELVLEINNFSGSLPPALGNLSNLKRLLVTSNNFSGVLPSSMERLTSLTDFRIGDNHFSGQIPKFIQNWINLNRLFIQASGLSGPIPSEIGLLTNLTDLRISDLNGAPSTFPPFKNLKKMTYLILRSCNITGVLPNDLDGSMTALKILDFSFNKINGSIPPSFSTLKRIENMYLTGNLLSKSVLNWTPQNGESIDLSYNKFKWINDENPGCQQNLNLFASSSQDNASSIAPCLGVTACTKPWYSLHINCGGEEVFINGTSTTKFEADRNAGGESSMYFKGGENWVVSNTGNFMNDNRTRRGFIAFPVNASALSITNPELYKTARISPISLTYYAYCMANGNYTVSLHFAEIMFTDDKTYRSLGRRIFDVYIQGKRELKDFNIVDEAGGVGKPIIKNFTVPVTDTTLEIRFFWAGKGTPAIPVRGVYGPLISAISVTSDFAPPSEGGNTISAGVVVGIVAAVAIVIFLVLGILWWRGCLRKERTLEQELKGLDLATGSFSLRQIKAATNNFDAVNKIGEGGFGPVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYLENNSLARALFGSEESQLKLNWPTRRNICIGIARGLTYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRSKDDCFYLLDWAHILNVKGSLIELVDPRLGSDLNNGEVMAMINIALQCTNVIAAERPTMSSVVSMLEGKIAVKEVVSDPNVSKQILNVMWSHPHNHEGQTISESQTQSMLMDGPRTGSSTSISDLYPINLYSNYLKNRD 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7617345 7627732 + evm.model.ptg000002l.632 HCH12g1027 555874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1027 1015 Pfam Leucine Rich Repeat 136 157 IPR001611 GO:0005515(InterPro)
HCH12g1027 1015 Gene3D Ribonuclease Inhibitor 264 373 IPR032675 -
HCH12g1027 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 954 - -
HCH12g1027 1015 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 266 - -
HCH12g1027 1015 Pfam Protein tyrosine and serine/threonine kinase 674 941 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1027 1015 Gene3D - 404 600 - -
HCH12g1027 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 599 - -
HCH12g1027 1015 SMART serkin_6 671 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1027 1015 Pfam Malectin domain 405 594 IPR021720 -
HCH12g1027 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1027 1015 SUPERFAMILY L domain-like 85 362 - -
HCH12g1027 1015 Gene3D Transferase(Phosphotransferase) domain 1 747 957 - -
HCH12g1027 1015 ProSiteProfiles Protein kinase domain profile. 671 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1027 1015 SUPERFAMILY Protein kinase-like (PK-like) 656 969 IPR011009 -
HCH12g1027 1015 CDD STKc_IRAK 677 944 - -
HCH12g1027 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 746 - -
HCH12g1027 1015 Gene3D Ribonuclease Inhibitor 201 263 IPR032675 -
HCH12g1027 1015 Gene3D Ribonuclease Inhibitor 43 200 IPR032675 -
HCH12g1027 1015 Gene3D Phosphorylase Kinase; domain 1 637 746 - -
HCH12g1027 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 957 IPR051824 -
HCH12g1027 1015 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515(InterPro)
HCH12g1027 1015 MobiDBLite consensus disorder prediction 970 994 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0990 HCH-Chr12:7218216 HCH12g1027 HCH-Chr12:7617345 0.00E+00 dispersed
HCH12g0991 HCH-Chr12:7237684 HCH12g1027 HCH-Chr12:7617345 0.00E+00 dispersed
HCH12g1027 HCH-Chr12:7617345 HCH12g1335 HCH-Chr12:30382504 9.80E-304 dispersed
HCH12g1027 HCH-Chr12:7617345 HCH12g0989 HCH-Chr12:7186492 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81128 PF07714 PK_Tyr_Ser-Thr 3.80E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1027 - - - 0.0