Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1035 ATGGCACAACTACCACCTAAAATACCAACTATGCCTCAAAATTGGCCTCATTTTCCTCCACCAATGTCTAATTTCACTAATCCTCCTCCTCCTCCACCGCACACGGCGGCCGACTCCTCCGCCCACCACCCTTCATGGGTCGACGAGTTTCTCGACTTCTCCACCGCCAGACGCGGCGTTCACCGCCGCTCCATGAGTGATTCTGTCGCTTTCTTTGAATCGCCGTTGGTCGAAGAATGCCGGAACTCCTCTGCCGGTGCCGCCTTGATGTTGCACGGCGCAAATGGGTTTGACCGCCTCGACGACGAGCAGCTTATGTCGATGTTTTCCGACGACATTTCCACGGCGGTGCCGCCCACCGCCTCGTCGTCTAACCCCTCCACGCCGTCCGACCAGAATAGTAATAACGATGAGAAGCCCACGCCGGTGGAAGAACGACAACAACAACATCAGCAGCAACAGCAGCCAAAGAATGAACCGGGAGAGGTGGAAAGTTCATGCCAACCAGAAACTCAACCTCCCCCGCCTCCCGCTGCCTCTGGCGGCGGCGATTCCACTCTTGATCCAAAGAGAGTTAAGAGAATTTTGGCAAATCGACAGTCAGCACAAAGGTCGAGAGTGAGAAAACTACAATACATTTCTGAGCTCGAGAGAAGTGTAACAACATTACAGACTGAAGTATCAGCACTGTCCCCAAGAGTAGCATTTTTGGACCACCAGAGGTTGGTTCTGAATGTTGATAACAGTGCTCTTAAGCAGAGGATAGCAGCTTTGGCTCAAGATAAGATTTTCAAGGATGCTCATCAAGAGGCATTAAGAAAGGAAGTAGAGAGATTAAGACAAGTTTACCACCAACAAAACCTCAAGAAAATGAGCAGACAAAATGCACCGCCGCCGCCTTCTTCAGCAGAAGCTTCTCATTTAGTTACACCACCACCGTTGCATCAGCCGATCGCTGCCGTGCCGGTGCGGAAGACGGAAGAGGAACAGCTTCTAAGTTGA 1002 51.5 MAQLPPKIPTMPQNWPHFPPPMSNFTNPPPPPPHTAADSSAHHPSWVDEFLDFSTARRGVHRRSMSDSVAFFESPLVEECRNSSAGAALMLHGANGFDRLDDEQLMSMFSDDISTAVPPTASSSNPSTPSDQNSNNDEKPTPVEERQQQHQQQQQPKNEPGEVESSCQPETQPPPPPAASGGGDSTLDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLVLNVDNSALKQRIAALAQDKIFKDAHQEALRKEVERLRQVYHQQNLKKMSRQNAPPPPSSAEASHLVTPPPLHQPIAAVPVRKTEEEQLLS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7690609 7693304 - evm.model.ptg000002l.624 HCH12g1035 555882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1035 333 MobiDBLite consensus disorder prediction 1 43 - -
HCH12g1035 333 MobiDBLite consensus disorder prediction 286 301 - -
HCH12g1035 333 MobiDBLite consensus disorder prediction 286 333 - -
HCH12g1035 333 MobiDBLite consensus disorder prediction 114 137 - -
HCH12g1035 333 MobiDBLite consensus disorder prediction 146 168 - -
HCH12g1035 333 CDD bZIP_plant_RF2 191 241 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1035 333 Coils Coil 269 289 - -
HCH12g1035 333 MobiDBLite consensus disorder prediction 114 188 - -
HCH12g1035 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1035 333 MobiDBLite consensus disorder prediction 1 37 - -
HCH12g1035 333 Gene3D - 189 263 - -
HCH12g1035 333 SUPERFAMILY Leucine zipper domain 190 244 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1035 333 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1035 333 FunFam Basic leucine zipper 61 189 262 - -
HCH12g1035 333 PANTHER BASIC LEUCINE ZIPPER 34 1 316 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
HCH12g1035 333 Pfam bZIP transcription factor 190 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1035 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1035 HCH-Chr12:7690609 HCH2g0709 HCH-Chr2:50833662 7.80E-40 dispersed
HCH12g1035 HCH-Chr12:7690609 HCH7g0262 HCH-Chr7:1824321 3.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32717 PF00170 bZIP_1 8.40E-10 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1035 - - - 0.0