Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1055 ATGTCGGATGTGGCGAGTATCGCGGAAGCTGTCGCTGCGAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTTTACAAAGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATTAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGCAACAATGTCGATCTCCCTATATCACCGAGTACTATGGTTCTTATCTCCACCAGACTAAGCTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTGCAGTCCGGTCAACCACTGGATGAAATGTCAATTGCATGCATTCTACGTGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACCGGGACATCAAAGCGGCAAACATTTTACTGACTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGCGTTTCTGCACAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCCGAGGTAATTCAAAATTCTGAAGGATACAATGAGAAGGCAGATATATGGTCTCTAGGAATCACGGCTATTGAGATGGCAAAAGGGGAACCTCCACTTGCAGATCTTCATCCAATGAGAGTTCTTTTTATTATACCTCGAGAGAGTCCTCCTCAGTTGGATGAGCATTTTTCTCGCCCCATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAGTACCCGGTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAGGAATGCCAGGAAGAGTCCTCGGCTTCTGGAGAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGATGACGAAACATCAAGTAATGATCCTAGAGCTGTAGGAGAAATGTCTGACACTGTGAAAGTGTCGAGAAATTTAATAGAAGAAACCGTTCGTGCCAGTAACCAGGGTAAATCTCCAAAAAATGCTGGATGGGACTTTAGTATTGGTGGTTCACAGAGTACGGGTACTGTTCGTGTAGTAAAACCACCTCAAATTAGGGAAAAGAGGCCTGAAGTTCCTTATGGTGGACAGGCTACACCTGGTAGAATTTCAGAGAGGGGTAACTGGCTGGCTGCATCTGCAAATGCACTACGTGATGCTTCGGAAGATGCTAGAGATCCATACGATAGGGAGGATAGTAGAGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTGTTGTTATCCGATCTCCCAGGGGATCTCAAGCATCTGCTCAATCCCATTATGAAAACAGTCCGCCTGGAAGTGCACATGCATATTTTGAAGATGCGTCTATTAGTGGAACTGTTATTTTGCGTGGTCAACATGATGATTCTGATTCTCCCCGAACTCCAAAATCCAGACTGGGAATTCAAGAAAGGACTTCAAACTTTTCTTCTGAAGACAGTGCATTAAACCTTGCAGAGGCAAAGGCTGCAATTCAAGCAGGATTGAAGAAAGCTAACGCAAGAGAAAGATCAGCGCGCAGCAAACCCAATGAAAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGACACTCTCGTGAATTCTATGAGGCACCAAGAGCATTGACAAGACCTCCTCAAGCAATTGATGATGAAGAAGGTGCTAAAGTAGCATTGTCTTCTGCGCCTTTATCGTTTTTGTTTATGCCATCCTTGAAAGAGGGAGTGGCTGATGATTTAGAAGGAACACCTGCTCATGCTGTAATTAATGCACTTATAAACATGGAGCACCGAAAACCCGGATCATGTGAGGTTCTTGTTACGAAGCTGCTCCAGCAATTGGCAAGTTCCAAGGAATCTTCACTAAAAGATTTACAAGATTTAGCTACTCGCTTATTTACCAAGGTTAAGACAGTTCCTGAAGATGAACAAAATTTGGCAGATGCTGAAAGCAGTAAAAAACAACAGAACAAAGAACTTCATCCAAATTCAAATTTGAGCTCACTAGCTAGATTCTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTCAACCCAGCTTAG 2085 42.4 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLQQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGQPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKVPGERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKEDDETSSNDPRAVGEMSDTVKVSRNLIEETVRASNQGKSPKNAGWDFSIGGSQSTGTVRVVKPPQIREKRPEVPYGGQATPGRISERGNWLAASANALRDASEDARDPYDREDSREDEELSVSGSGTVVIRSPRGSQASAQSHYENSPPGSAHAYFEDASISGTVILRGQHDDSDSPRTPKSRLGIQERTSNFSSEDSALNLAEAKAAIQAGLKKANARERSARSKPNERKENRRTEQTVSSSDSSRHSREFYEAPRALTRPPQAIDDEEGAKVALSSAPLSFLFMPSLKEGVADDLEGTPAHAVINALINMEHRKPGSCEVLVTKLLQQLASSKESSLKDLQDLATRLFTKVKTVPEDEQNLADAESSKKQQNKELHPNSNLSSLARFLLSRWQGQVSRDLNPA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7866225 7876709 - evm.model.ptg000002l.604 HCH12g1055 555902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1055 694 MobiDBLite consensus disorder prediction 457 487 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 469 487 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 389 409 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 502 544 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 414 437 - -
HCH12g1055 694 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
HCH12g1055 694 Coils Coil 645 665 - -
HCH12g1055 694 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
HCH12g1055 694 MobiDBLite consensus disorder prediction 506 527 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 648 663 - -
HCH12g1055 694 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
HCH12g1055 694 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 Coils Coil 41 68 - -
HCH12g1055 694 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 650 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
HCH12g1055 694 MobiDBLite consensus disorder prediction 648 670 - -
HCH12g1055 694 Gene3D Transferase(Phosphotransferase) domain 1 12 306 - -
HCH12g1055 694 CDD STKc_MST3_like 14 287 - -
HCH12g1055 694 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 MobiDBLite consensus disorder prediction 278 298 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 278 444 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 317 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1055 K08838 - - csv:101214412 1132.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1055 HCH-Chr12:7866225 HCH1g0869 HCH-Chr1:57240163 2.60E-69 dispersed
HCH12g1055 HCH-Chr12:7866225 HCH13g0822 HCH-Chr13:8095930 1.50E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81129 PF00069 Pkinase 5.90E-69 CL0016 HCH PK