Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1055 ATGTCGGATGTGGCGAGTATCGCGGAAGCTGTCGCTGCGAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTTTACAAAGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATTAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGCAACAATGTCGATCTCCCTATATCACCGAGTACTATGGTTCTTATCTCCACCAGACTAAGCTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTGCAGTCCGGTCAACCACTGGATGAAATGTCAATTGCATGCATTCTACGTGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACCGGGACATCAAAGCGGCAAACATTTTACTGACTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGCGTTTCTGCACAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCCGAGGTAATTCAAAATTCTGAAGGATACAATGAGAAGGCAGATATATGGTCTCTAGGAATCACGGCTATTGAGATGGCAAAAGGGGAACCTCCACTTGCAGATCTTCATCCAATGAGAGTTCTTTTTATTATACCTCGAGAGAGTCCTCCTCAGTTGGATGAGCATTTTTCTCGCCCCATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAGTACCCGGTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAGGAATGCCAGGAAGAGTCCTCGGCTTCTGGAGAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGATGACGAAACATCAAGTAATGATCCTAGAGCTGTAGGAGAAATGTCTGACACTGTGAAAGTGTCGAGAAATTTAATAGAAGAAACCGTTCGTGCCAGTAACCAGGGTAAATCTCCAAAAAATGCTGGATGGGACTTTAGTATTGGTGGTTCACAGAGTACGGGTACTGTTCGTGTAGTAAAACCACCTCAAATTAGGGAAAAGAGGCCTGAAGTTCCTTATGGTGGACAGGCTACACCTGGTAGAATTTCAGAGAGGGGTAACTGGCTGGCTGCATCTGCAAATGCACTACGTGATGCTTCGGAAGATGCTAGAGATCCATACGATAGGGAGGATAGTAGAGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACTGTTGTTATCCGATCTCCCAGGGGATCTCAAGCATCTGCTCAATCCCATTATGAAAACAGTCCGCCTGGAAGTGCACATGCATATTTTGAAGATGCGTCTATTAGTGGAACTGTTATTTTGCGTGGTCAACATGATGATTCTGATTCTCCCCGAACTCCAAAATCCAGACTGGGAATTCAAGAAAGGACTTCAAACTTTTCTTCTGAAGACAGTGCATTAAACCTTGCAGAGGCAAAGGCTGCAATTCAAGCAGGATTGAAGAAAGCTAACGCAAGAGAAAGATCAGCGCGCAGCAAACCCAATGAAAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGACACTCTCGTGAATTCTATGAGGCACCAAGAGCATTGACAAGACCTCCTCAAGCAATTGATGATGAAGAAGGTGCTAAAGTAGCATTGTCTTCTGCGCCTTTATCGTTTTTGTTTATGCCATCCTTGAAAGAGGGAGTGGCTGATGATTTAGAAGGAACACCTGCTCATGCTGTAATTAATGCACTTATAAACATGGAGCACCGAAAACCCGGATCATGTGAGGTTCTTGTTACGAAGCTGCTCCAGCAATTGGCAAGTTCCAAGGAATCTTCACTAAAAGATTTACAAGATTTAGCTACTCGCTTATTTACCAAGGTTAAGACAGTTCCTGAAGATGAACAAAATTTGGCAGATGCTGAAAGCAGTAAAAAACAACAGAACAAAGAACTTCATCCAAATTCAAATTTGAGCTCACTAGCTAGATTCTTACTCTCCAGATGGCAAGGTCAGGTATCAAGGGATCTCAACCCAGCTTAG 2085 42.4 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLQQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGQPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKVPGERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKEDDETSSNDPRAVGEMSDTVKVSRNLIEETVRASNQGKSPKNAGWDFSIGGSQSTGTVRVVKPPQIREKRPEVPYGGQATPGRISERGNWLAASANALRDASEDARDPYDREDSREDEELSVSGSGTVVIRSPRGSQASAQSHYENSPPGSAHAYFEDASISGTVILRGQHDDSDSPRTPKSRLGIQERTSNFSSEDSALNLAEAKAAIQAGLKKANARERSARSKPNERKENRRTEQTVSSSDSSRHSREFYEAPRALTRPPQAIDDEEGAKVALSSAPLSFLFMPSLKEGVADDLEGTPAHAVINALINMEHRKPGSCEVLVTKLLQQLASSKESSLKDLQDLATRLFTKVKTVPEDEQNLADAESSKKQQNKELHPNSNLSSLARFLLSRWQGQVSRDLNPA 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7866225 7876709 - evm.model.ptg000002l.604 HCH12g1055 555902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1055 694 MobiDBLite consensus disorder prediction 457 487 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 469 487 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 389 409 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 502 544 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 414 437 - -
HCH12g1055 694 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
HCH12g1055 694 Coils Coil 645 665 - -
HCH12g1055 694 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
HCH12g1055 694 MobiDBLite consensus disorder prediction 506 527 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 648 663 - -
HCH12g1055 694 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
HCH12g1055 694 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 Coils Coil 41 68 - -
HCH12g1055 694 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 650 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
HCH12g1055 694 MobiDBLite consensus disorder prediction 648 670 - -
HCH12g1055 694 Gene3D Transferase(Phosphotransferase) domain 1 12 306 - -
HCH12g1055 694 CDD STKc_MST3_like 14 287 - -
HCH12g1055 694 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1055 694 MobiDBLite consensus disorder prediction 278 298 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 278 444 - -
HCH12g1055 694 MobiDBLite consensus disorder prediction 317 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1055 HCH-Chr12:7866225 HCH1g0869 HCH-Chr1:57240163 2.60E-69 dispersed
HCH12g1055 HCH-Chr12:7866225 HCH13g0822 HCH-Chr13:8095930 1.50E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81129 PF00069 Pkinase 5.90E-69 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1055 K08838 - csv:101214412 1132.47