Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1058 ATGACTGGAAAAGAAATCCTCCATAAGATGAAGGAAAAAGTTGGACTTTGTTCATCCGATCCCGACTCCGGAAAAGGAAAGAGCAAGATGTCTAAGCATGTCACTCATGGTTATCACTTGGTGAAAGGCAAATCAAATCATGCCATGGAAGATTATATTGTTGCAGAGTTTAAGCAAGTTGACAATCACGAGCTTGGTTTGTTTGCAATCTTTGATGGCCATTTGAGCAATGTTATCCCTGATTATTTACGAGCTCATTTATTCGAGAACATTATAAACGAGCCTACTTTCTGGACAGATCCAAAGAATGCAGTCAGGAAAGCATATAAAGCAACCGATGCTGAGATTTTGGAGAAGGCTGTTGATTTTGGTCATGGGGGTTCAACTGCTGTTACAGCCATATTGGTCGACTGTCGAGTACTAGTAGTGGCCAATGTGGGGGACTCTCGTGCAGTTATCTGTAGGAATGGCGAGGCCATCCAATTATCGGTCGATCATGAGCCAATTGTTGAAAAAGAAAGCATTGAGAACAGAGGTGGTTTTGTATCAAACTTTCCAGGGGACGTTCCTCGTGTCGATGGGCAGTTGGCAGTGGCAAGGGCATTTGGTGACAAGAGCTTGAAGAAGCACCTGAGCTCAGAGCCTGATGTGGTAGTGAAGATGCTAGATGACGAGGCCGAGTTCATTATCTTGGCAAGCGATGGATTGTGGAAGGTGATGTCAAACCAAGAAGCAGTAGAGTCTATCAGGCAAATAAAAGATGCTCGAGCGGCAGCCATGCACTTGACTGAGGAGGCCCTCAAGAGGAAGAGCACAGATGATATTTCCTGTGTAGTTGTGAGACTTTAA 849 44.52 MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGYHLVKGKSNHAMEDYIVAEFKQVDNHELGLFAIFDGHLSNVIPDYLRAHLFENIINEPTFWTDPKNAVRKAYKATDAEILEKAVDFGHGGSTAVTAILVDCRVLVVANVGDSRAVICRNGEAIQLSVDHEPIVEKESIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKKHLSSEPDVVVKMLDDEAEFIILASDGLWKVMSNQEAVESIRQIKDARAAAMHLTEEALKRKSTDDISCVVVRL 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7936003 7939190 + evm.model.ptg000002l.601 HCH12g1058 555905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1058 282 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH12g1058 282 FunFam Probable protein phosphatase 2C 39 25 282 - -
HCH12g1058 282 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
HCH12g1058 282 Pfam Protein phosphatase 2C 46 275 IPR001932 -
HCH12g1058 282 CDD PP2Cc 36 282 IPR001932 -
HCH12g1058 282 SMART PP2C_4 27 280 IPR001932 -
HCH12g1058 282 Gene3D - 29 282 IPR036457 -
HCH12g1058 282 SUPERFAMILY PP2C-like 31 282 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0261 HCH-Chr12:1447153 HCH12g1058 HCH-Chr12:7936003 6.00E-86 dispersed
HCH12g1058 HCH-Chr12:7936003 HCH3g1454 HCH-Chr3:52510969 7.80E-33 dispersed
HCH13g0185 HCH-Chr13:1245736 HCH12g1058 HCH-Chr12:7936003 2.90E-48 transposed
HCH12g1058 HCH-Chr12:7936003 HCH7g0133 HCH-Chr7:899353 7.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1058 K17506 - csv:101215129 475.322