Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1062 ATGGAGCTATGGAGATATCTCTCGATTTTTCTATTCATTTTCTTGTCGTGTTTTTTGTCTGGTTCTGAATCTTACACATTCTACGTGGGTGGCAAAGATGGGTGGGTCGTTAATCCATCTGAGAATTATAATAATTGGTCCGGCAGAAATAGATTCCTACTCAATGATGTTCTTGTTTTCAAGTATGAGAAAGGTTCGGATTCTGTGTTGGTGGTGAATAAGGAAGATTATGATGAGTGTAATTTGAAGAATCCGATATTGAAATTAGAAGATGGGAATTCTCAGTTCACGTTTGATCGTTTTGGACCTTTCTACTTTATCAGTGGGAGAGAAGGTAATTGTCAAAAGGGTCAGAAGTTGCTCGTTGTTGTTATTTCTGTTAGGCCTCCCCCGCTTCCACCCAATGCACCGTCTTATTCACCTCCTGGTGCTAAAACTCCGGTGACAGCTCCGGTGCCCGGAGTCTCCCCCGGTGCGCCTAATACAGGACCGGGAGCTAAATCTCCAACACCATCTCCACCATCCAGTACACCTTCGCCTAGTGCTCCAGGGGCTAAAACCCCGGGAACGGCTCCTGTGCCATACGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCTGGAGCCAAAACCCCGGGAACGGCTCCCGTGCCATCGGGCACGCCTTCTTCACCTAGTGCTCCCGGAGCCAAAACCCCGGTAACGGCTCCAGTGCCATCGGGCACGCCTTCTACACCTAGTGCTCCCCGAGCAAAAACCCCGGGAACGGCTCCCGTGCCATCGGGTACGCCTTCTACACCTAATGCTCCCGGAGCCAAAACACCGGGATCGGCTCCCGTACCATCGGGGACGCCTTCTACACCTAGTGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGCACGCCTTCTTCACCTAATGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGTACGCCTTCTTCACCTAATGCTCCCGAGGCTAAAACCCCAGGAACGGCTCCTGTTCCATCAGGTTCTCTAACTCCGTCGGGACCGGGAGCTAAATCTCCATCAACATCTTCACCAATCGGTTCACCTTCTTCGCCTACTACTCCAGGAGCTAAAACCCCAGAGACGGCACCAGTGCCAATTGGTTCTCCCGGTTCACCGTATCCAGGAGCAACATCTCCGTCGTCAGGTTCTCCTAGCTCACAGAATCCGGGAACTAGCTCTCCACTGGGATCACCCACCTCGCCGTCCCAGGCGAATTCACCCTCTTCCGGAGCTTCTTCTCCATCATCATCACCTTCTTCCGGTTCTCCTACCGGAGCTCAAACTCCAAGAACAGCTCCAGTTCCAGCATTGTCACCAGCAGGATCGCCCTTCTCACCGATGCCGACAGTATTGTCTCCCGAGTCCAATGCTCCAACAGCAGAAGGTCCAGTAGTATCTCCGACAAGCTCCCCGCTTCCGTCAACTGAATTGTCTCCGGCAAGCTCGCCGCCATCTCCGCCATTATCGACAGGAGAATCCCCATCACCAAGTGGGTCAGGATCAGGGTCAGGCAGCGGTGCAGCGAGTGAGACGACGCCGTCAGGACCACGATCATCCGCCGAGGCCCATGCTCCCTCAGCAATTTTGTTGGGTACCATTATAATGCTTCTCATTAATGGAGCAATTTCTTTTCTTTAA 1812 53.81 MELWRYLSIFLFIFLSCFLSGSESYTFYVGGKDGWVVNPSENYNNWSGRNRFLLNDVLVFKYEKGSDSVLVVNKEDYDECNLKNPILKLEDGNSQFTFDRFGPFYFISGREGNCQKGQKLLVVVISVRPPPLPPNAPSYSPPGAKTPVTAPVPGVSPGAPNTGPGAKSPTPSPPSSTPSPSAPGAKTPGTAPVPYGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGAKTPGTAPVPSGTPSSPSAPGAKTPVTAPVPSGTPSTPSAPRAKTPGTAPVPSGTPSTPNAPGAKTPGSAPVPSGTPSTPSAPGAKTPGSAPVPSGTPSSPNAPGAKTPGSAPVPSGTPSSPNAPEAKTPGTAPVPSGSLTPSGPGAKSPSTSSPIGSPSSPTTPGAKTPETAPVPIGSPGSPYPGATSPSSGSPSSQNPGTSSPLGSPTSPSQANSPSSGASSPSSSPSSGSPTGAQTPRTAPVPALSPAGSPFSPMPTVLSPESNAPTAEGPVVSPTSSPLPSTELSPASSPPSPPLSTGESPSPSGSGSGSGSGAASETTPSGPRSSAEAHAPSAILLGTIIMLLINGAISFL 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7980148 7982123 + evm.model.ptg000002l.597 HCH12g1062 555909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1062 603 MobiDBLite consensus disorder prediction 194 241 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 535 549 - -
HCH12g1062 603 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
HCH12g1062 603 PRINTS Proline rich extensin signature 167 183 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 191 208 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 130 142 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 209 234 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 142 163 - -
HCH12g1062 603 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 134 580 - -
HCH12g1062 603 Gene3D - 24 127 IPR008972 -
HCH12g1062 603 FunFam Early nodulin-like protein 1 24 129 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 134 187 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 550 577 - -
HCH12g1062 603 CDD OsENODL1_like 25 125 IPR041846 -
HCH12g1062 603 MobiDBLite consensus disorder prediction 431 489 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 381 415 - -
HCH12g1062 603 PANTHER BLUE COPPER PROTEIN 15 174 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH12g1062 603 MobiDBLite consensus disorder prediction 506 534 - -
HCH12g1062 603 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
HCH12g1062 603 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1062 HCH-Chr12:7980148 HCH6g0775 HCH-Chr6:42531118 1.00E-21 dispersed
HCH4g0475 HCH-Chr4:3107581 HCH12g1062 HCH-Chr12:7980148 3.30E-26 transposed
HCH6g1178 HCH-Chr6:46241835 HCH12g1062 HCH-Chr12:7980148 1.60E-19 transposed
HCH1g0407 HCH-Chr1:52072722 HCH12g1062 HCH-Chr12:7980148 1.00E-22 transposed
HCH12g1062 HCH-Chr12:7980148 HCH2g0836 HCH-Chr2:51857593 3.50E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1062 - - - 0.0