Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1062 ATGGAGCTATGGAGATATCTCTCGATTTTTCTATTCATTTTCTTGTCGTGTTTTTTGTCTGGTTCTGAATCTTACACATTCTACGTGGGTGGCAAAGATGGGTGGGTCGTTAATCCATCTGAGAATTATAATAATTGGTCCGGCAGAAATAGATTCCTACTCAATGATGTTCTTGTTTTCAAGTATGAGAAAGGTTCGGATTCTGTGTTGGTGGTGAATAAGGAAGATTATGATGAGTGTAATTTGAAGAATCCGATATTGAAATTAGAAGATGGGAATTCTCAGTTCACGTTTGATCGTTTTGGACCTTTCTACTTTATCAGTGGGAGAGAAGGTAATTGTCAAAAGGGTCAGAAGTTGCTCGTTGTTGTTATTTCTGTTAGGCCTCCCCCGCTTCCACCCAATGCACCGTCTTATTCACCTCCTGGTGCTAAAACTCCGGTGACAGCTCCGGTGCCCGGAGTCTCCCCCGGTGCGCCTAATACAGGACCGGGAGCTAAATCTCCAACACCATCTCCACCATCCAGTACACCTTCGCCTAGTGCTCCAGGGGCTAAAACCCCGGGAACGGCTCCTGTGCCATACGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCTGGAGCCAAAACCCCGGGAACGGCTCCCGTGCCATCGGGCACGCCTTCTTCACCTAGTGCTCCCGGAGCCAAAACCCCGGTAACGGCTCCAGTGCCATCGGGCACGCCTTCTACACCTAGTGCTCCCCGAGCAAAAACCCCGGGAACGGCTCCCGTGCCATCGGGTACGCCTTCTACACCTAATGCTCCCGGAGCCAAAACACCGGGATCGGCTCCCGTACCATCGGGGACGCCTTCTACACCTAGTGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGCACGCCTTCTTCACCTAATGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGTACGCCTTCTTCACCTAATGCTCCCGAGGCTAAAACCCCAGGAACGGCTCCTGTTCCATCAGGTTCTCTAACTCCGTCGGGACCGGGAGCTAAATCTCCATCAACATCTTCACCAATCGGTTCACCTTCTTCGCCTACTACTCCAGGAGCTAAAACCCCAGAGACGGCACCAGTGCCAATTGGTTCTCCCGGTTCACCGTATCCAGGAGCAACATCTCCGTCGTCAGGTTCTCCTAGCTCACAGAATCCGGGAACTAGCTCTCCACTGGGATCACCCACCTCGCCGTCCCAGGCGAATTCACCCTCTTCCGGAGCTTCTTCTCCATCATCATCACCTTCTTCCGGTTCTCCTACCGGAGCTCAAACTCCAAGAACAGCTCCAGTTCCAGCATTGTCACCAGCAGGATCGCCCTTCTCACCGATGCCGACAGTATTGTCTCCCGAGTCCAATGCTCCAACAGCAGAAGGTCCAGTAGTATCTCCGACAAGCTCCCCGCTTCCGTCAACTGAATTGTCTCCGGCAAGCTCGCCGCCATCTCCGCCATTATCGACAGGAGAATCCCCATCACCAAGTGGGTCAGGATCAGGGTCAGGCAGCGGTGCAGCGAGTGAGACGACGCCGTCAGGACCACGATCATCCGCCGAGGCCCATGCTCCCTCAGCAATTTTGTTGGGTACCATTATAATGCTTCTCATTAATGGAGCAATTTCTTTTCTTTAA 1812 53.81 MELWRYLSIFLFIFLSCFLSGSESYTFYVGGKDGWVVNPSENYNNWSGRNRFLLNDVLVFKYEKGSDSVLVVNKEDYDECNLKNPILKLEDGNSQFTFDRFGPFYFISGREGNCQKGQKLLVVVISVRPPPLPPNAPSYSPPGAKTPVTAPVPGVSPGAPNTGPGAKSPTPSPPSSTPSPSAPGAKTPGTAPVPYGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGAKTPGTAPVPSGTPSSPSAPGAKTPVTAPVPSGTPSTPSAPRAKTPGTAPVPSGTPSTPNAPGAKTPGSAPVPSGTPSTPSAPGAKTPGSAPVPSGTPSSPNAPGAKTPGSAPVPSGTPSSPNAPEAKTPGTAPVPSGSLTPSGPGAKSPSTSSPIGSPSSPTTPGAKTPETAPVPIGSPGSPYPGATSPSSGSPSSQNPGTSSPLGSPTSPSQANSPSSGASSPSSSPSSGSPTGAQTPRTAPVPALSPAGSPFSPMPTVLSPESNAPTAEGPVVSPTSSPLPSTELSPASSPPSPPLSTGESPSPSGSGSGSGSGAASETTPSGPRSSAEAHAPSAILLGTIIMLLINGAISFL 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7980148 7982123 + evm.model.ptg000002l.597 HCH12g1062 555909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1062 603 MobiDBLite consensus disorder prediction 194 241 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 535 549 - -
HCH12g1062 603 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
HCH12g1062 603 PRINTS Proline rich extensin signature 167 183 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 191 208 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 130 142 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 209 234 - -
HCH12g1062 603 PRINTS Proline rich extensin signature 142 163 - -
HCH12g1062 603 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 134 580 - -
HCH12g1062 603 Gene3D - 24 127 IPR008972 -
HCH12g1062 603 FunFam Early nodulin-like protein 1 24 129 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 134 187 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 550 577 - -
HCH12g1062 603 CDD OsENODL1_like 25 125 IPR041846 -
HCH12g1062 603 MobiDBLite consensus disorder prediction 431 489 - -
HCH12g1062 603 MobiDBLite consensus disorder prediction 381 415 - -
HCH12g1062 603 PANTHER BLUE COPPER PROTEIN 15 174 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH12g1062 603 MobiDBLite consensus disorder prediction 506 534 - -
HCH12g1062 603 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
HCH12g1062 603 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1062 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1062 HCH-Chr12:7980148 HCH6g0775 HCH-Chr6:42531118 1.00E-21 dispersed
HCH4g0475 HCH-Chr4:3107581 HCH12g1062 HCH-Chr12:7980148 3.30E-26 transposed
HCH6g1178 HCH-Chr6:46241835 HCH12g1062 HCH-Chr12:7980148 1.60E-19 transposed
HCH1g0407 HCH-Chr1:52072722 HCH12g1062 HCH-Chr12:7980148 1.00E-22 transposed
HCH12g1062 HCH-Chr12:7980148 HCH2g0836 HCH-Chr2:51857593 3.50E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH2g0836 . 12 155 Phytocyanin Superfamily AT4G28365 52.8 2.8e-37 152.1
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH6g1178 . 17 174 Phytocyanin Superfamily AT1G64640 50.9 6.0e-37 151.0
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH4g0475 . 10 170 Phytocyanin Superfamily AT5G25090 53.8 1.4e-41 166.4
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH2g1317 . 35 219 Phytocyanin Superfamily AT1G08500 60.8 1.1e-61 233.4
HCH8g0501 . 27 153 Phytocyanin Superfamily AT2G27035 55.1 6.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54