Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1062 | ATGGAGCTATGGAGATATCTCTCGATTTTTCTATTCATTTTCTTGTCGTGTTTTTTGTCTGGTTCTGAATCTTACACATTCTACGTGGGTGGCAAAGATGGGTGGGTCGTTAATCCATCTGAGAATTATAATAATTGGTCCGGCAGAAATAGATTCCTACTCAATGATGTTCTTGTTTTCAAGTATGAGAAAGGTTCGGATTCTGTGTTGGTGGTGAATAAGGAAGATTATGATGAGTGTAATTTGAAGAATCCGATATTGAAATTAGAAGATGGGAATTCTCAGTTCACGTTTGATCGTTTTGGACCTTTCTACTTTATCAGTGGGAGAGAAGGTAATTGTCAAAAGGGTCAGAAGTTGCTCGTTGTTGTTATTTCTGTTAGGCCTCCCCCGCTTCCACCCAATGCACCGTCTTATTCACCTCCTGGTGCTAAAACTCCGGTGACAGCTCCGGTGCCCGGAGTCTCCCCCGGTGCGCCTAATACAGGACCGGGAGCTAAATCTCCAACACCATCTCCACCATCCAGTACACCTTCGCCTAGTGCTCCAGGGGCTAAAACCCCGGGAACGGCTCCTGTGCCATACGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCAGGCCCCAAAACTCCGGGAACGGCTCCTGTGCCATCCGGTACGCCTTCTACACCTAGTGCTCCTGGAGCCAAAACCCCGGGAACGGCTCCCGTGCCATCGGGCACGCCTTCTTCACCTAGTGCTCCCGGAGCCAAAACCCCGGTAACGGCTCCAGTGCCATCGGGCACGCCTTCTACACCTAGTGCTCCCCGAGCAAAAACCCCGGGAACGGCTCCCGTGCCATCGGGTACGCCTTCTACACCTAATGCTCCCGGAGCCAAAACACCGGGATCGGCTCCCGTACCATCGGGGACGCCTTCTACACCTAGTGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGCACGCCTTCTTCACCTAATGCTCCCGGAGCCAAAACTCCAGGATCGGCTCCGGTGCCATCGGGTACGCCTTCTTCACCTAATGCTCCCGAGGCTAAAACCCCAGGAACGGCTCCTGTTCCATCAGGTTCTCTAACTCCGTCGGGACCGGGAGCTAAATCTCCATCAACATCTTCACCAATCGGTTCACCTTCTTCGCCTACTACTCCAGGAGCTAAAACCCCAGAGACGGCACCAGTGCCAATTGGTTCTCCCGGTTCACCGTATCCAGGAGCAACATCTCCGTCGTCAGGTTCTCCTAGCTCACAGAATCCGGGAACTAGCTCTCCACTGGGATCACCCACCTCGCCGTCCCAGGCGAATTCACCCTCTTCCGGAGCTTCTTCTCCATCATCATCACCTTCTTCCGGTTCTCCTACCGGAGCTCAAACTCCAAGAACAGCTCCAGTTCCAGCATTGTCACCAGCAGGATCGCCCTTCTCACCGATGCCGACAGTATTGTCTCCCGAGTCCAATGCTCCAACAGCAGAAGGTCCAGTAGTATCTCCGACAAGCTCCCCGCTTCCGTCAACTGAATTGTCTCCGGCAAGCTCGCCGCCATCTCCGCCATTATCGACAGGAGAATCCCCATCACCAAGTGGGTCAGGATCAGGGTCAGGCAGCGGTGCAGCGAGTGAGACGACGCCGTCAGGACCACGATCATCCGCCGAGGCCCATGCTCCCTCAGCAATTTTGTTGGGTACCATTATAATGCTTCTCATTAATGGAGCAATTTCTTTTCTTTAA | 1812 | 53.81 | MELWRYLSIFLFIFLSCFLSGSESYTFYVGGKDGWVVNPSENYNNWSGRNRFLLNDVLVFKYEKGSDSVLVVNKEDYDECNLKNPILKLEDGNSQFTFDRFGPFYFISGREGNCQKGQKLLVVVISVRPPPLPPNAPSYSPPGAKTPVTAPVPGVSPGAPNTGPGAKSPTPSPPSSTPSPSAPGAKTPGTAPVPYGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGPKTPGTAPVPSGTPSTPSAPGAKTPGTAPVPSGTPSSPSAPGAKTPVTAPVPSGTPSTPSAPRAKTPGTAPVPSGTPSTPNAPGAKTPGSAPVPSGTPSTPSAPGAKTPGSAPVPSGTPSSPNAPGAKTPGSAPVPSGTPSSPNAPEAKTPGTAPVPSGSLTPSGPGAKSPSTSSPIGSPSSPTTPGAKTPETAPVPIGSPGSPYPGATSPSSGSPSSQNPGTSSPLGSPTSPSQANSPSSGASSPSSSPSSGSPTGAQTPRTAPVPALSPAGSPFSPMPTVLSPESNAPTAEGPVVSPTSSPLPSTELSPASSPPSPPLSTGESPSPSGSGSGSGSGAASETTPSGPRSSAEAHAPSAILLGTIIMLLINGAISFL | 603 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7980148 | 7982123 | + | evm.model.ptg000002l.597 | HCH12g1062 | 555909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 194 | 241 | - | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 535 | 549 | - | - | |
HCH12g1062 | 603 | ProSiteProfiles | Phytocyanin domain profile. | 25 | 126 | IPR003245 | GO:0009055(InterPro) | |
HCH12g1062 | 603 | PRINTS | Proline rich extensin signature | 167 | 183 | - | - | |
HCH12g1062 | 603 | PRINTS | Proline rich extensin signature | 191 | 208 | - | - | |
HCH12g1062 | 603 | PRINTS | Proline rich extensin signature | 130 | 142 | - | - | |
HCH12g1062 | 603 | PRINTS | Proline rich extensin signature | 209 | 234 | - | - | |
HCH12g1062 | 603 | PRINTS | Proline rich extensin signature | 142 | 163 | - | - | |
HCH12g1062 | 603 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | - | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 134 | 580 | - | - | |
HCH12g1062 | 603 | Gene3D | - | 24 | 127 | IPR008972 | - | |
HCH12g1062 | 603 | FunFam | Early nodulin-like protein 1 | 24 | 129 | - | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 134 | 187 | - | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 550 | 577 | - | - | |
HCH12g1062 | 603 | CDD | OsENODL1_like | 25 | 125 | IPR041846 | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 431 | 489 | - | - | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 381 | 415 | - | - | |
HCH12g1062 | 603 | PANTHER | BLUE COPPER PROTEIN | 15 | 174 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
HCH12g1062 | 603 | MobiDBLite | consensus disorder prediction | 506 | 534 | - | - | |
HCH12g1062 | 603 | Pfam | Plastocyanin-like domain | 35 | 118 | IPR003245 | GO:0009055(InterPro) | |
HCH12g1062 | 603 | SUPERFAMILY | Cupredoxins | 24 | 125 | IPR008972 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1062 | HCH-Chr12:7980148 | HCH6g0775 | HCH-Chr6:42531118 | 1.00E-21 | dispersed | |
HCH4g0475 | HCH-Chr4:3107581 | HCH12g1062 | HCH-Chr12:7980148 | 3.30E-26 | transposed | |
HCH6g1178 | HCH-Chr6:46241835 | HCH12g1062 | HCH-Chr12:7980148 | 1.60E-19 | transposed | |
HCH1g0407 | HCH-Chr1:52072722 | HCH12g1062 | HCH-Chr12:7980148 | 1.00E-22 | transposed | |
HCH12g1062 | HCH-Chr12:7980148 | HCH2g0836 | HCH-Chr2:51857593 | 3.50E-38 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1062 | - | - | - | 0.0 |