Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1081 ATGGCTGAAAATGCTCAAGAAATGCGATCTCTGGCTTTGACGCCTACTTGGTCTGTTGCTTCTGTGTTGTCAATTTTCGTCATAGTTTCATTGCTTGTAGAGCGCTCCATTCATCGGCTAAGCCATTGGCTGGGGAAAACTAACAGAAAACCCTTGTTTGAGGCAGTGGAGAAAATGAAAGAAGAGTTAATGCTGCTTGGATTTATTTCATTGCTTCTAACTGCAACATCTAGTGTGATATCAAATATATGCATTCCATCAAGGTTTTACAATACCTCCTTTACTCCATGCACGGAGTCGGAGATTGATGAACAGGATGAGGATAATTCATCAGAGGGACGAAAACTATATACTGTTTCTGTTCTTCCACATTTGTTTAGGAGGGTGCTACAAGCGAACAGGAATACTTGCAAAGAGGGTTTTGAGCCTTTTGTTTCATATGAAGGACTTGAGCAGTTGCATCGCTTTATTTTTGTAATGGCAGTAACTCACATATCTTATAGCTGCTTAACAATGTTGCTTGCAATTGTGAAGATTCATGGTTGGAGAGAATGGGAAAATGAAGCTCACATGGACCAGCATGGTTCAGTCAATGATTCCACGAGAGAATTGATAATGCAGAGACAATCAACCTTTGTTCAATATCACACCTCGAATCCTTTAACCAGGAATAGTTTTCTTATCTGGGTGACATGTTTCTTCCGGCAATTCGGGCGTTCTGTTGTTCGTGCTGACTACCTCACACTTCGCAAAGGCTTCATCATGAATCACCACCTCTCATTAACATATGATTTTCATAGCTACATGATCCGATCTATGGAAGAAGAATTTCAGAGGATAGTTGGTGTGAGTGGTCCACTGTGGGGATTCGTCGTTGCTTTTATGCTGTTTAATATAAAAGGGTCTAACCTATATTTTTGGATAGCAACTATTCCTATTACTCTTGTTCTTTTAGTGGGCACAAAGCTGCAGCATGTTATTGCAACCTTGGCATTAGAGAATGCTGGTATAACTGGATTCTTTTCTGGAGCAAAGCTTAGGCCTCGAGACGATCTTTTCTGGTTTAAGAAGCCAGAACTACTGTTGTCCTTGATCCATTTTATTTTGTTCCAGAATGCTTTCGAATTGGCTTCGTTCTTCTGGTTCTGGTGGCAATTTGGATACGGTTCATGCTTCATTAGGAATCATCTGCTTGTCTATATAAGGCTGATTTTGGGATTTACCGGACAGTTTCTTTGCAGCTACAGCACCTTGCCCCTCTATGCACTGGTTACTCAGATGGGAACAAACTACAAGGCTGCCTTGATTCCACGAAGAATAAGGGAAACGATTCATGGGTGGGGTAAGTCAGCTAGAAGGAAAAGAAGGCTCCGAATGTTCAATGATGATGCTACAATCCACACGGAAACAAGCACAGTGATGTCACTTGAGGATGATGATGATCATCTTATGGGTACTCCTGAAATCGGCACTGGATATGCACAAATCGAGTTACAACGGACTGCCATGGTGGATGCCTCTGTTTCCGTCGCTAATGACACATCAAGTAGGGTTGGAACTCCTCTTCTTCAACCCTCTGTTTCCCTCGCTTCACCAGTTATCCTAAACATTGATGCAGAAAGTCTTATGAGAAGTTCTTCTATGCCAGCAAAAAGATAA 1659 41.71 MAENAQEMRSLALTPTWSVASVLSIFVIVSLLVERSIHRLSHWLGKTNRKPLFEAVEKMKEELMLLGFISLLLTATSSVISNICIPSRFYNTSFTPCTESEIDEQDEDNSSEGRKLYTVSVLPHLFRRVLQANRNTCKEGFEPFVSYEGLEQLHRFIFVMAVTHISYSCLTMLLAIVKIHGWREWENEAHMDQHGSVNDSTRELIMQRQSTFVQYHTSNPLTRNSFLIWVTCFFRQFGRSVVRADYLTLRKGFIMNHHLSLTYDFHSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLFNIKGSNLYFWIATIPITLVLLVGTKLQHVIATLALENAGITGFFSGAKLRPRDDLFWFKKPELLLSLIHFILFQNAFELASFFWFWWQFGYGSCFIRNHLLVYIRLILGFTGQFLCSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGWGKSARRKRRLRMFNDDATIHTETSTVMSLEDDDDHLMGTPEIGTGYAQIELQRTAMVDASVSVANDTSSRVGTPLLQPSVSLASPVILNIDAESLMRSSSMPAKR 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8186378 8200309 - evm.model.ptg000002l.578 HCH12g1081 555928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1081 552 PANTHER MLO-LIKE PROTEIN 1 1 470 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH12g1081 552 Pfam Mlo family 9 466 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1081 HCH-Chr12:8186378 HCH13g0796 HCH-Chr13:7660504 4.90E-265 dispersed
HCH12g1081 HCH-Chr12:8186378 HCH2g1166 HCH-Chr2:54237510 1.00E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1081 K08472 - csv:101207170 924.08