Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1105 ATGGTGGAAATGAAGTTTCTTTTGGTTTCTCTGATTCTTTATGTTTTTTTGTTCATGTGTGTTGGATCTTATGCTTCTTTCACTCCAGTAGATAACTATTTGATAGTTTGTGGTTCTCCTCAAAATGTCACCTTCCAAGGGAGAACTTTTGTTCCTGATTCTGGACATTCTTTACTCTCCCATGGAAGTGGGAATTCTGTTGTTGTTAGTTCAAATACTACTTCTCCATCTCCAATCTATCAATCTGCTCGTGTTTTTACGGGCATTGCTTCGTATAGATTCGAAATTAAGCAAGAGGGCCGGCATTGGGTTCGCTTGTATTTCTATCCTATTCCGAAAGCTGGTCGAGATTTGACGTCTGCCTCAATAACTGTTGTCACTGAGCAGTTTGTGCTCTTGAACAATTTCACTTTCAAGAACTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCTGATTTGTTGACCCTCACTTTCATTCCCACAAATGGGTCGGTTTCGTTTGTTAATGCAATTGAAGTTGTCTCAATGCCTGATGGAGTGCTCCCTGATCAAGCATTGGCTTTGAATCCGTCTGCTCCGTTTAGTGGTATTTCTGCACTTGCTCTTGAAACTGTTTATCGGTTGAACATGGGCGGTCCTTTGATCACATCACAAAATGATACCCTGGGAAGAACTTGGGAGAATGATGTGAAATACCTCCATGTCAATAGTTCTGCAGTGAATATCTCGGTCAGCCCAGCGAGTATAAAATATCCTCCTGGTCTTACACCAGAAGTAGCACCGAATTGGGTTTATGCTACTGCTGATGCCATGGGAGATCCAAATGTTCAGAATGTGAACTTCAATTTAACTTGGGTTTTCTCTGTTGAGCCGAATTTCATGTATTTCGTTCGAGTGCATTTCTGTGATATTATGAGTAAGGCTCTCAACACTCTGGTCTTCAACCTTTACATAAATTCTGATAATGCTCTGGGAAGCTTTGATCTGTCGTCTCTAACCGGTGAATTGGGTGTGCCTTATTACAAAGACTTCATTTCCAACTTGGTGGATTCAGATATATTGACTGTTAGCGTTGGTCCAGATACTATGGCAGACCTCACTAATGCAACTATGAATGGCTTGGAGATTATGAAGATTAGCAATCATGTTGGGAGCTTGGATGGTGCTTTGTCTGTTGAAAGTCTTTTTCCGAAAGCACCCTCAAAGAAGAACAACATAGCGATAATTATCGGTTCTGTCCTTGGAGCTGCGGTACTCATTTCTTTGCTTGTTTTGTGTTATTGCTGCTTGGTAGCTCGCAAGGCAAAATCAACCCAACAGGCATACCCATGGCTGCCTTTACCTTTATATGGAAACTCTCAAACCATGACAAAAGGGTCTACAACTTCTCAAAAAAGTGGAACCGCAAGCTTCATTTCATTGGCTTCCTCCAGTCTTGGCAGACTCTTCACGTTCCAGGAGATTCTTGATGCTACCAACAAATTTGATGAAAACCTACTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAAGGAACACTTGAAGATGGTACAAAGGTAGCTGTTAAAAGAGGAAACCCCAGATCCGAACAAGGTCTTGCTGAATTTCGAACTGAAATTGAAATGTTATCTAAGCTTCGTCATCGGCACCTGGTGTCTCTTATTGGATACTGTGATGAAAGATCGGAAATGATTCTCGTCTATGAATATATGGCAAATGGACCTCTTAGGAGCCATTTATATGGTACAGATCTACCACCACTATCATGGAAGCAACGGCTTGATATTTGCATTGGTGCAGCAAGGGGGCTTCATTATCTGCATACTGGTGCAGCTCAAAGCATAATACATAGAGACGTTAAGACCACAAACATTCTTTTGGATGAGAATTTTGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACCGGTCCATCTCTGGATCAGACTCATGTAAGTACTGCTGTCAAGGGTAGTTTCGGTTACCTTGATCCTGAATACTTCAGGCGACAACAACTTACCGAGAAGTCAGACGTATACTCATTTGGGGTTGTACTAATGGAAGTTCTCTGCACAAGGCCAGCTCTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATTGCAGAATGGGCAATGACCTGGCAAAAGAAGGGCATGCTGGATCAAATCATGGATCCAAATCTGGTGGGGAAGGTTAATCCAGCATCTCTTAAGAAGTTTGGGGAAACAGCTGAGAAGTGCCTGGCTGAGTACGGGGTTGACCGGCCATCGATGGGAGATGTCCTGTGGAACCTCGAATATGCTCTTCAGCTAGAGGAAACTTCGTCTGCACTCATGGAACCTGAAGACAACAGCACAAACCACATTCCTACCATCCAACTGACTCCACTTGAGCCATTTGATAACAGTGTAAGCATGATCGATGGAGGAAACTCTGGCACCGATGATGATGCAGAAGATGCTGCAACAAGTGCGGTGTTTTCTCAGCTAGTAAATCCTCGTGGAAGATGA 2526 42.72 MVEMKFLLVSLILYVFLFMCVGSYASFTPVDNYLIVCGSPQNVTFQGRTFVPDSGHSLLSHGSGNSVVVSSNTTSPSPIYQSARVFTGIASYRFEIKQEGRHWVRLYFYPIPKAGRDLTSASITVVTEQFVLLNNFTFKNYNGSFMFKEYAINVTSDLLTLTFIPTNGSVSFVNAIEVVSMPDGVLPDQALALNPSAPFSGISALALETVYRLNMGGPLITSQNDTLGRTWENDVKYLHVNSSAVNISVSPASIKYPPGLTPEVAPNWVYATADAMGDPNVQNVNFNLTWVFSVEPNFMYFVRVHFCDIMSKALNTLVFNLYINSDNALGSFDLSSLTGELGVPYYKDFISNLVDSDILTVSVGPDTMADLTNATMNGLEIMKISNHVGSLDGALSVESLFPKAPSKKNNIAIIIGSVLGAAVLISLLVLCYCCLVARKAKSTQQAYPWLPLPLYGNSQTMTKGSTTSQKSGTASFISLASSSLGRLFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8576738 8579263 + evm.model.ptg000002l.554 HCH12g1105 555952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1105 841 SUPERFAMILY Protein kinase-like (PK-like) 477 771 IPR011009 -
HCH12g1105 841 FunFam receptor-like protein kinase FERONIA 461 575 - -
HCH12g1105 841 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524(InterPro)
HCH12g1105 841 MobiDBLite consensus disorder prediction 805 826 - -
HCH12g1105 841 Gene3D Phosphorylase Kinase; domain 1 459 575 - -
HCH12g1105 841 Pfam Protein tyrosine and serine/threonine kinase 506 697 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1105 841 FunFam Putative receptor-like protein kinase 32 182 - -
HCH12g1105 841 ProSiteProfiles Protein kinase domain profile. 500 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1105 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1105 841 FunFam Receptor-like protein kinase FERONIA 576 792 - -
HCH12g1105 841 CDD STKc_IRAK 506 771 - -
HCH12g1105 841 Gene3D Transferase(Phosphotransferase) domain 1 576 793 - -
HCH12g1105 841 Gene3D - 32 181 - -
HCH12g1105 841 Gene3D - 205 386 - -
HCH12g1105 841 PANTHER OS07G0166700 PROTEIN 488 777 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
HCH12g1105 841 Pfam Malectin-like domain 37 384 IPR024788 -
HCH12g1105 841 FunFam Receptor-like protein kinase FERONIA 206 386 - -
HCH12g1105 841 SMART serkin_6 500 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0718 HCH-Chr10:6677720 HCH12g1105 HCH-Chr12:8576738 5.20E-189 dispersed
HCH12g1105 HCH-Chr12:8576738 HCH8g1279 HCH-Chr8:47967930 5.20E-234 dispersed
HCH13g0925 HCH-Chr13:11698726 HCH12g1105 HCH-Chr12:8576738 2.70E-43 dispersed
HCH13g1113 HCH-Chr13:36611693 HCH12g1105 HCH-Chr12:8576738 5.90E-67 dispersed
HCH12g1105 HCH-Chr12:8576738 HCH2g1125 HCH-Chr2:53975542 1.80E-239 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81130 PF12819 Malectin_like 4.80E-39 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1105 - - - 0.0