Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g1113 | ATGATGTTATCGGCGTCGCCGTCGACGATAGCTCGGAGCTCCCTGGAGGAAATGTTGGATTCCCTCCGGCGAAGAGATGATAATGAGAAACCTAAAGACTTACCCCCGGCATTGCCATCTCGGCCTACTTCCCACGGGAAGATTCCTCCGGCGAGGCGGTCGTTGCCGGTCAATTTTAAGGTTACTGATGACGGTTCGACGGAGTGCTCGGTTAATGGTTTAAATGGAAGGGATGATATGCAGGGGAAAGAGTATAGGATAGGTAGCTTTGGATTTGGATTCAAGAGGATGAAGAAAGAACAAGATGACGAATCACCGTATATTGTAGCTTCGGAAAATGATAATAGGGATCAAGTGCATTGTGCTTCACTGTCGAATATTCGACGCTCGAATTGTGATGATAAAATTGGTTATTTTGTTCAGAAGAAACTTCGAGTATGGTGTCAACTTTCAAATGGACAATGGGAGTTGGGAACTATACAATCAATTGTTGGGGAGGAAGCTATTGTCATGCTCTCAAACAAAAATGTTATTAAAGTCTTGAAGATGGAACTTGTGCCTGCTAATCCAGATATAGTGGAGGGGGTCGACGATCTTATACAGCTTGGTTATTTGAACGAGCCTTCTGTTCTTTCTAGTCTCCAACATAGATATTCTCAAGACAAGATTTATAGTAATGCAGGGCCAGTTTTGATTGCAGTCAATCCCTTGAAAGACACTAAACTGTATGGGAATGAATTTATTACAGCCTATAGTCAGAGACTCATGGATGGCCCTCATGTTTATGCTATAGCAGATGATGCCTACACCAGGATGATGAAAGATGGAACTGATCAATCCATCATTATCAGTGGGGAAAGTGGAGCAGGGAAAACTGAGACAGCAAAAGTTGCAATACAGTACTTGGCTGCTGTTGGTGGTGACAGTGATGGTTTAGATGATAGAATCTCACAGACAAATTGTATACTTGAAGCATTTGGGAATGCTAAAACCTCAAGAAACAATAACTCCAGCAGATTTGGGAAGTTGTTTGAAATTCATTTTAACACAACAGGGAAGATATATGGTGCTGCATTCCAAACTTTTCTGTTGGAAAAGTCGAGAGTGGTTCAGCTGTCCAATGGTGAGAGGTCATTCCATGTATTTTATCAACTTTGTGCCGGGGCACCATCAATAATTAAAGAGAAATTAAATATCAGAATGGCTAGTGAGTACAGTTATCTTAATCAGAGTGAATGCTTGAGGATTGATGGTGTTGATGATGCACAGAAATTTCAAATCCTTGTGGAAGCCTTAGATATACTTCAAATCACTAAGGAAGATCAAGAGCATGTATTTGGTATGCTTGCAGCAGTCTTGTGGCTTGGAAATATTACATTTCAAGCAATTGATAGTGAAAATCACGTGGAGGTGATAGCCGATGAAGCCGTTACGATTGCTGCTAAGTTGATGGGTTGCGGTTCTAATGAGCTTAAGTTAGTTTTGTCGACCCACAAAATGCAATCTGATAAGGATATCATTTCTAAGAAATTAACGAAACGACAGGCAATTGATGTAAGAGATGCATTAGCAAAATTTATCTATGCAAGTTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAGGAAAGCAACATTCTGGAAGATCCATAAATATCCTTGACATTTATGGGTTTGAGTCATTTAAGAAGAATGGCTTTGAACAATTTTGTATAAATTATGCAAACGAGAGGCTGCAGCAGCATTTTATGCGGCATCTGTTTAAACTTCAGCAGGAGGACTGTGAATTGGAGGGGGTTGATTTCACAAAAGCTAATTTAAAGGACAATCAAGAATGTTTAAATCTTATTGAGAAGAAACCTCTAGGAATACTAGCTTTGTTGGATGAAGAATTAAAGCTTCCCAAGGCTACAGATCTGACATTTGCTAATAAACTGAAACATCACTTGAAATCTTATCCTTGCTTTAAAGGGGAAAGAGGCAGGGCTTTTGGTGTTTGTCATTATGCTGGAGAGGTTGTATATGATACAAATGGGTTTTTGGAGAAGAACAGAGATGTGCTGCACTCAGATTCCATCCATCTCTTTTCATCATGTAGTTGCAAGCTACTCCAACTATTTGCCTCCAAAATGCTTAACCATTCTCACAAACCAGCAGTTTCATCATGCTTTTCAGAAACATTGGAATCATCCAGGCAAACCGTCGCAACTGAGTATAAGGTTTTACTATTTGACCTAATTCATAAATTGGAGCGCACGAATCATCACTTCATTTGTTGCATAAGGCCAAACAAAAATCAGGCCCGGGGCTTATTTGAGGAGGACCTTGTCTTACAACAGCTTAGGTACTGTGGAATTTTGGAAGTTGTTAGGATATCAAGATCTGGATATCCTACCAGAATGACACATCAAGAATTTGCTGGAAGGTACGGATTCTTTCTTCAAGAAGCTGGCGTATCTCAAGATCCATTAAGTATATCAGTTGCTGTACTTCAACAACTGAACATCCACCCGGAAATGTACCAACTTGGTTTTACAAAACTGTTTTTCCGAACTGGGCTGATTAGGGGATTGGAGAAAAGGAGAAAGCAGGTTCTTCAAGGCATAGTGGGTGTCCAAAAGTACTATCGTGGTTGCCGTGCCCGTAATCATTTCAATGAACTTAAGAAAGGAGCCACTACCTTACAATCATTAATACGTGGTTCGTTGGCTCAGAAGCGTTTTAACCAAATGCTTGATTCAAATAGATCTTTTCCTGAGAATAAAAAATATAAATCATACCCAGGCAGGAGGATTACAGAGGATAAATTTCAAGAGCGGGTTCAAGGTCTGCCTACAGCTTTGGCCGAGCTTCAAAAGCGGGTCCTTGAGGCAGAAGCAACCATTGAGAAAAAGGAAGAGGAAAATGCTGCACTGAGGGAGCAAGTACAACAGTTTGAGGCTAGGTGGTCAGAATATGAGGCAAAAATGAAGTCCATGGAGGATATGTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAAAGAGTCTTGCTGCGGAAAATGTGGCTTGTCCACCTGGAAGAGTTCATGCTAATTCACCACCTCACTATTATGATTCTGAGGATACCACTTCTATGGGATCTCGAACTCCTGGCGGTAGCACGCCAATCAAATTTTCTGGCATTTCTGAGGTTGGAACAGCCCGAGAAATGAATGGTACTCTAGTTGCGGTGAACAATCTAGTAAAGGAATTTGAACAGCGAAGAATGGCATTTGACGATGATGCCAAAGCTTTAGCTGAAGTTAAATCTGGTCAAACAGTGTCAAATATGAATCCAGATGATGAATACCGCAAAATTAAAGTTCAGTTTGAGACATGGAAAAAAGAGTATAAGGTTAGATTACGGGAAACAAAGGCGAAGATTCATAAGCATGGACATTGGGAAGTTGATAAACTTCGTCGAAAATGGTGGGGTAAATTAAGTACTAGAGCATCATCATAG | 3507 | 40.55 | MMLSASPSTIARSSLEEMLDSLRRRDDNEKPKDLPPALPSRPTSHGKIPPARRSLPVNFKVTDDGSTECSVNGLNGRDDMQGKEYRIGSFGFGFKRMKKEQDDESPYIVASENDNRDQVHCASLSNIRRSNCDDKIGYFVQKKLRVWCQLSNGQWELGTIQSIVGEEAIVMLSNKNVIKVLKMELVPANPDIVEGVDDLIQLGYLNEPSVLSSLQHRYSQDKIYSNAGPVLIAVNPLKDTKLYGNEFITAYSQRLMDGPHVYAIADDAYTRMMKDGTDQSIIISGESGAGKTETAKVAIQYLAAVGGDSDGLDDRISQTNCILEAFGNAKTSRNNNSSRFGKLFEIHFNTTGKIYGAAFQTFLLEKSRVVQLSNGERSFHVFYQLCAGAPSIIKEKLNIRMASEYSYLNQSECLRIDGVDDAQKFQILVEALDILQITKEDQEHVFGMLAAVLWLGNITFQAIDSENHVEVIADEAVTIAAKLMGCGSNELKLVLSTHKMQSDKDIISKKLTKRQAIDVRDALAKFIYASLFDWLVEQINKSLKPGKQHSGRSINILDIYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDCELEGVDFTKANLKDNQECLNLIEKKPLGILALLDEELKLPKATDLTFANKLKHHLKSYPCFKGERGRAFGVCHYAGEVVYDTNGFLEKNRDVLHSDSIHLFSSCSCKLLQLFASKMLNHSHKPAVSSCFSETLESSRQTVATEYKVLLFDLIHKLERTNHHFICCIRPNKNQARGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMTHQEFAGRYGFFLQEAGVSQDPLSISVAVLQQLNIHPEMYQLGFTKLFFRTGLIRGLEKRRKQVLQGIVGVQKYYRGCRARNHFNELKKGATTLQSLIRGSLAQKRFNQMLDSNRSFPENKKYKSYPGRRITEDKFQERVQGLPTALAELQKRVLEAEATIEKKEEENAALREQVQQFEARWSEYEAKMKSMEDMWQKQMASLQMSLAAAKKSLAAENVACPPGRVHANSPPHYYDSEDTTSMGSRTPGGSTPIKFSGISEVGTAREMNGTLVAVNNLVKEFEQRRMAFDDDAKALAEVKSGQTVSNMNPDDEYRKIKVQFETWKKEYKVRLRETKAKIHKHGHWEVDKLRRKWWGKLSTRASS | 1168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8661373 | 8671585 | + | evm.model.ptg000002l.546 | HCH12g1113 | 555960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g1113 | 1168 | ProSiteProfiles | IQ motif profile. | 870 | 897 | - | - | |
| HCH12g1113 | 1168 | Pfam | Myosin head (motor domain) | 196 | 854 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | Gene3D | - | 563 | 756 | - | - | |
| HCH12g1113 | 1168 | Gene3D | Kinesin motor domain | 197 | 795 | IPR036961 | - | |
| HCH12g1113 | 1168 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 141 | 190 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | Gene3D | - | 377 | 436 | - | - | |
| HCH12g1113 | 1168 | Coils | Coil | 951 | 999 | - | - | |
| HCH12g1113 | 1168 | SMART | MYSc_2a | 188 | 867 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - | |
| HCH12g1113 | 1168 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| HCH12g1113 | 1168 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 438 | 734 | - | - | |
| HCH12g1113 | 1168 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| HCH12g1113 | 1168 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 169 | 915 | IPR027417 | - | |
| HCH12g1113 | 1168 | CDD | MYSc_Myo8 | 208 | 854 | IPR036022 | - | |
| HCH12g1113 | 1168 | SMART | iq_5 | 867 | 889 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g1113 | 1168 | SMART | iq_5 | 890 | 912 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g1113 | 1168 | PRINTS | Myosin heavy chain signature | 553 | 581 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | PRINTS | Myosin heavy chain signature | 606 | 634 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | PRINTS | Myosin heavy chain signature | 321 | 348 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | PRINTS | Myosin heavy chain signature | 224 | 243 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | PRINTS | Myosin heavy chain signature | 278 | 303 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | FunFam | Myosin heavy chain | 377 | 433 | - | - | |
| HCH12g1113 | 1168 | Gene3D | - | 871 | 918 | - | - | |
| HCH12g1113 | 1168 | Pfam | IQ calmodulin-binding motif | 893 | 911 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g1113 | 1168 | ProSiteProfiles | Myosin motor domain profile. | 194 | 866 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH12g1113 | 1168 | ProSiteProfiles | IQ motif profile. | 891 | 920 | - | - | |
| HCH12g1113 | 1168 | PANTHER | MYOSIN | 145 | 1158 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| HCH12g1113 | 1168 | Gene3D | - | 799 | 867 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1113 | HCH-Chr12:8661373 | HCH1g0546 | HCH-Chr1:54426403 | 0.00E+00 | dispersed | |
| HCH12g1113 | HCH-Chr12:8661373 | HCH4g0507 | HCH-Chr4:3321214 | 9.00E-152 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g1113 | K10357 | - | csv:101210624 | 1724.91 |