Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1114 ATGGCAGCAGCAGCAACAGCAGCTATTACTAACTCCACCACTCTTCTTAGACCAACCCCATTTCTGGGACAAACCAAAGGATCAAACTCCAATGCTCTTAGAAATGTTGTCTCCATGGGAACTGCCAAATACACCATGGGAAATGAGTTGTGGTATGGTCCAGACAGAGTAAAGTATTTGGGACCATTTTCAGCTCAGACTCCTTCATATTTAACCGGAGAATTTCCTGGTGATTATGGATGGGACACTGCTGGATTATCTGCTGATCCTGAGGCTTTTGCCAAGAATAGAGCTCTTGAGGTGATCCATGGGAGGTGGGCGATGCTTGGGGCATTTGGTTGCATAACCCCAGAAGTTCTTGAGAAATATGTGAAGGTTGATTTCAAGGAACCAGTGTGGTTCAAAGCAGGAGCTCAAATCTTCTCAGAAGGAGGATTGGATTACTTGGGGAACCCAAATCTTGTTCATGCTCAGAGCATCCTGGCAGTGCTTGGTTTCCAAGTTGTTCTAATGGGTCTTGTTGAAGGATATCGCATCAATGGCTTGCCGGGAGTCGGAGAAGGAAACGATCTCTACCCGGGTGGACAATATTTCGATCCTCTAGGCCTCGCCGACGACCCGGTTACATTTGCAGAGCTGAAGGTGAAAGAGATTAAAAATGGCCGCTTGGCAATGTTTTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTGACAGGAAAAGGACCTCTTGAGAACCTGTTGGACCACCTAGATAACCCAGTTGCTAACAATGCTTGGGTTTATGCTACAAAGTTTGCGCCTGGATCTTAA 810 46.05 MAAAATAAITNSTTLLRPTPFLGQTKGSNSNALRNVVSMGTAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKYVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8672768 8673933 - evm.model.ptg000002l.545 HCH12g1114 555961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1114 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH12g1114 269 FunFam Chlorophyll a-b binding protein, chloroplastic 58 262 - -
HCH12g1114 269 Pfam Chlorophyll A-B binding protein 68 236 IPR022796 -
HCH12g1114 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
HCH12g1114 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1114 HCH-Chr12:8672768 HCH3g0790 HCH-Chr3:5790920 3.00E-98 dispersed
HCH12g1628 HCH-Chr12:43203493 HCH12g1114 HCH-Chr12:8672768 8.70E-47 transposed
HCH6g0408 HCH-Chr6:8274928 HCH12g1114 HCH-Chr12:8672768 3.20E-97 transposed
HCH7g0335 HCH-Chr7:2374643 HCH12g1114 HCH-Chr12:8672768 4.80E-101 transposed
HCH12g1114 HCH-Chr12:8672768 HCH6g0711 HCH-Chr6:40515738 4.40E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1114 K08914 - vvi:100260599 510.76