Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1129 ATGGGAATTCTTCCTCTTCCTTTGATATCTTCTCTAACTGTTCTATTTCTCTTATCTTCTTTCAAAACCTCTTTATCTCTTGATTTCATAACATCTTCTCAAAACCTCAGCGATGGCAGCACTTTAGTCTCAGAAAAAGGATTTTTCGAACTGGGTTTCTTCAGTCCTGGCATTTCCAACAATCGTTACTTGGGAATTTGGTTCAAGAAAATCTCAGTTCCCACCATTGTTTGGGTTGCTAATAGAGAAAACCCCATCAATGATTCATCTGCTGTTTTCAAAATAAACACGACAGGAAACGAGGTTGTTTTGATCCAGAATGCTTCCTTTGTTGTTTGGTTGGGAAAATCTTTAAGACCATTGGAGAATCCTAAGTTGCAGCTCTTGGACAGTGGAAATCTTGTCCTGAAAAATGGGAATTCAGAGGAGTTTTTGTGGCAGAGTTTTGATTATCCAACTGATACTTTATTGCCAGGAATGAAACTGGGATGGGATTTTAAAAATGGAATAAACAGAAAATTATCAGCTTGGAAAAATCCCAACGATCCATCTCCTGGAACTTTGACATTTGAAATGGAGAATTATAGCTACCCAGACCCAACTATGTGGAATGGCTCCAAAGAGTTCATGAGAAGTGGTCCATGGAATGGAATTCAGTTTAGTGCTAAACCTACTGCTGCTTTGCCAATTTTGGTTTATCATTATGTGAATACTAAAGATGAACTTTCTTACAGCTACCAACTCATTAACAGCTCCATGATAGGAAGAATGGTGATGAATCAAACCAAGTCCAGAAGAGAGGCTTTGATCTGGTCTGAATCCGAGAAGATTTGGAAGGTTTACGCAACGATGCCGAGGGATTACTGCGATACGTATGGCCTTTGTGGTGCTTATGGGAGTTGTGACATTGAGGAGGTGCCAGCTTGTCAATGTCTTAAAGGGTTTAGGCCAAGAGTACAAGAGAAATGGAATTTAATGGATTATACAGAAGGGTGTGCTAGAAATAAGCAGATAAATTGTTCTGATGAAGTCGGGTTCGCAAAGTTTCCGGGGTTGAAATTGCCTGACACCAAGCTGTCTTGGGTGAATGAAAGTATGAGTTTAAGTGAGTGCAGGGAAAAATGCTTGAGAAATTGTTCTTGTGTGGGGTTTGCTAATACAGATATTAGAGGCTCAGGTAGTGGCTGTGCCATTTGGGTTGGTGATCTTATTGATATCAAAGTGGTTAAAAGAGGTGGACAAGATTTATATGTTAAACTGCTTGCTTCTGAATTGGTGACAAAGAAGAAGAGTGTGGTTATGGTTGGTGTTATAGTAGCAGTTGCTGTTGTTATTATTGCCGGCCTGCTTCTCGTTGGTTTATACATTATCAGAAGAAGGAAAGGCCTTGAAGGTAAGAACTTTGAAGGGCAAGATGAAAACTTGGAGCTCCCATTATTTGACTTATCAACTATATCAAATGCCACCGATAACTTTTCGATTTCGAACAAGCTTGGAGAAGGTGGTTTTGGATCAGTCTTCAGGGGTAGGCTCTCAGATGGACATGATATTGCTGTAAAGAGGCTTTCCAGCTACTCCAGACAAGGACCTGATGAATTCAAGAACGAAGTAATACTTATCGCGAAACTTCAGCATCGAAATCTTGTAAAACTTCTCGGCTGCTGCATCCAAGGAGAAGAAAAAATGTTGATTTATGAGTACATGCCTAATAAGAGCTTGGACTCCTTCATATTTGATGCAACTAAAAAGAAACTGTTAGATTGGTCGAAGCGATTCAATATCATATGCGGGATAGCTAGAGGGATTCTTTATCTTCATCAAGATTCGAGATTGAGGATCATACACCGAGATCTCAAAGCAAGCAATGTCTTGCTTGATGTTGATATGAACCCAAAAATCTCAGACTTTGGAATGGCCAGAACTTTTGGGGGGGATCAAACAGAAGGTAACACTAGGAGGGTGGTTGGAACATATGGATACATGGCACCAGAATATGCTATCGATGGACAGTTTTCAATAAAGTCCGATGTCTTTAGTTTTGGTATTTTATTATTGGAGATTATAAGTGGCGAGAAGAATAGAGGATTTTATCGTCCGAACAATTCTCTCAACCTTATCGGATATGCGTGGAACTTATGGAATGAAGGAAGACCACTAGAATTGATCGACGCGGCCATTGGAGACTCGTATGCTCTATCGGAAGTATTACGGTGCATCCATGTGAGCCTCCTGTGCTTGCAACAATATCCTGAGGATAGACCAACAATGCCAAATGTGGTTCTAATGCTAAGTAGTGAGAGTGCCTTGGCACAACCAAAACAACCAGGATTCTACATGGAAAGAGACTCACTTGAAGGAGATTCTTCTTCAGGCAAGAATGAATCTTCTACTGCCAATGAGTTAACTATTACTCTTTTGGAGGCTAGATAA 2430 40.16 MGILPLPLISSLTVLFLLSSFKTSLSLDFITSSQNLSDGSTLVSEKGFFELGFFSPGISNNRYLGIWFKKISVPTIVWVANRENPINDSSAVFKINTTGNEVVLIQNASFVVWLGKSLRPLENPKLQLLDSGNLVLKNGNSEEFLWQSFDYPTDTLLPGMKLGWDFKNGINRKLSAWKNPNDPSPGTLTFEMENYSYPDPTMWNGSKEFMRSGPWNGIQFSAKPTAALPILVYHYVNTKDELSYSYQLINSSMIGRMVMNQTKSRREALIWSESEKIWKVYATMPRDYCDTYGLCGAYGSCDIEEVPACQCLKGFRPRVQEKWNLMDYTEGCARNKQINCSDEVGFAKFPGLKLPDTKLSWVNESMSLSECREKCLRNCSCVGFANTDIRGSGSGCAIWVGDLIDIKVVKRGGQDLYVKLLASELVTKKKSVVMVGVIVAVAVVIIAGLLLVGLYIIRRRKGLEGKNFEGQDENLELPLFDLSTISNATDNFSISNKLGEGGFGSVFRGRLSDGHDIAVKRLSSYSRQGPDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDATKKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDVDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFYRPNNSLNLIGYAWNLWNEGRPLELIDAAIGDSYALSEVLRCIHVSLLCLQQYPEDRPTMPNVVLMLSSESALAQPKQPGFYMERDSLEGDSSSGKNESSTANELTITLLEAR 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8876046 8879671 - evm.model.ptg000002l.530 HCH12g1129 555976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1129 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 568 771 - -
HCH12g1129 809 Gene3D Hepatocyte Growth Factor 336 421 - -
HCH12g1129 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1129 809 Gene3D Transferase(Phosphotransferase) domain 1 568 776 - -
HCH12g1129 809 SUPERFAMILY Protein kinase-like (PK-like) 476 763 IPR011009 -
HCH12g1129 809 Pfam D-mannose binding lectin 75 178 IPR001480 -
HCH12g1129 809 SMART blect_4 33 152 IPR001480 -
HCH12g1129 809 Pfam Domain of unknown function (DUF3403) 764 809 IPR021820 GO:0004674(InterPro)
HCH12g1129 809 CDD STKc_IRAK 498 763 - -
HCH12g1129 809 SMART ntp_6 341 420 IPR003609 -
HCH12g1129 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 183 IPR036426 -
HCH12g1129 809 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
HCH12g1129 809 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 27 777 - -
HCH12g1129 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
HCH12g1129 809 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
HCH12g1129 809 MobiDBLite consensus disorder prediction 789 803 - -
HCH12g1129 809 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524(InterPro)
HCH12g1129 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 567 - -
HCH12g1129 809 SMART serkin_6 492 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1129 809 ProSiteProfiles Protein kinase domain profile. 492 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1129 809 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544(InterPro)
HCH12g1129 809 MobiDBLite consensus disorder prediction 780 809 - -
HCH12g1129 809 Gene3D Phosphorylase Kinase; domain 1 458 567 - -
HCH12g1129 809 Pfam Protein tyrosine and serine/threonine kinase 494 759 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1129 809 Pfam PAN-like domain 340 406 IPR003609 -
HCH12g1129 809 PIRSF SRK 2 809 IPR024171 GO:0004674(InterPro)
HCH12g1129 809 Gene3D - 24 149 IPR036426 -
HCH12g1129 809 CDD B_lectin 36 152 IPR001480 -
HCH12g1129 809 CDD PAN_AP_plant 337 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1129 HCH-Chr12:8876046 HCH6g0718 HCH-Chr6:40666946 3.60E-293 dispersed
HCH11g0378 HCH-Chr11:3551991 HCH12g1129 HCH-Chr12:8876046 2.40E-08 transposed
HCH12g1129 HCH-Chr12:8876046 HCH2g0774 HCH-Chr2:51395714 4.50E-118 wgd
HCH12g1129 HCH-Chr12:8876046 HCH6g0716 HCH-Chr6:40611922 6.20E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81131 PF07714 PK_Tyr_Ser-Thr 8.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1129 - - - 0.0